Age | Commit message (Collapse) | Author | Files | Lines | |
---|---|---|---|---|---|
2023-11-23 | Bump version, fix test from last commit, check and test | Johannes Ranke | 6 | -136/+68 | |
2023-11-23 | fix: 'R/illparms.R': An ill-defined random effect is now also found if there ↵ | Johannes Ranke | 3 | -5/+38 | |
is only one random effect in the model. Also add a test for this. | |||||
2023-11-16 | Update pkgdown docs to bootstrap 5 with search | Johannes Ranke | 315 | -13204/+20683 | |
2023-11-02 | Benchmarks on new CPU with current versions | Johannes Ranke | 5 | -4/+68 | |
2023-10-30 | Update static docs | Ranke Johannes | 236 | -993/+1269 | |
2023-10-30 | The UBA Report on the template is published | Ranke Johannes | 2 | -56/+91 | |
Also, add a long overdue reference to previous work in population based modelling of degradation data. | |||||
2023-10-14 | Update static docs and build logv1.2.6 | Johannes Ranke | 9 | -30/+37 | |
2023-10-13 | Update DESCRIPTION und NEWS | Johannes Ranke | 2 | -4/+8 | |
2023-10-09 | Fix an error in the template | Johannes Ranke | 2 | -1/+1 | |
Thanks to Janina Wöltjen for pointing it out | |||||
2023-08-17 | Update tests without any openblas variant | Johannes Ranke | 7 | -680/+731 | |
This even a bit faster. | |||||
2023-08-17 | Update test log with libopenblas0-pthread | Johannes Ranke | 1 | -49/+15 | |
2023-08-17 | Update platform specific tests on desktop | Johannes Ranke | 7 | -696/+746 | |
2023-08-17 | Point to the dmta pathway vignette in the dmta test | Johannes Ranke | 1 | -2/+5 | |
2023-08-10 | Add a link to the new vignette in online docs | Johannes Ranke | 9 | -14/+36 | |
2023-08-09 | Update static docsv1.2.5 | Johannes Ranke | 23 | -75/+2645 | |
2023-08-09 | Go back to jammy on travis | Johannes Ranke | 1 | -1/+1 | |
As it passed all tests | |||||
2023-08-09 | Go back to focal, skip drat repo on travis | Ranke Johannes | 1 | -2/+1 | |
2023-08-09 | Try jammy on travis | Ranke Johannes | 1 | -1/+1 | |
2023-08-09 | Depend on saemix 3.2 to control test results | Ranke Johannes | 1 | -1/+1 | |
2023-08-09 | Don't install saemix 3.2 from github any more | Ranke Johannes | 4 | -19/+19 | |
Emmanuelle has made an official release to CRAN in June | |||||
2023-08-08 | Update docs, check and test on RStudio server | Ranke Johannes | 5 | -56/+49 | |
2023-08-08 | Fix a logical error in the mesotrione vignette | Ranke Johannes | 2 | -1/+1 | |
2023-08-08 | RStudio project infrastructure | Ranke Johannes | 3 | -0/+25 | |
2023-08-07 | Typos | Ranke Johannes | 1 | -2/+2 | |
2023-08-04 | Mesotrione data and vignette | Johannes Ranke | 15 | -703/+1318 | |
The vignette illustrates pH dependent degradation (covariate modelling) with some detail for the parent compound. Also, a bug in the saem method of the illparms function was fixed, which prevented to find ill-defined parameters in cases where e.g. slopes of covariate models have a negative estimate. | |||||
2023-05-19 | Prepare release of v1.2.4v1.2.4 | Johannes Ranke | 185 | -5978/+3258 | |
- Update DESCRIPTION - Update Makefile to document how to use R-patched - Remove markup from two URLs to avoid CRAN NOTE - Switch two vignettes from html_document to html_vignette to save space in the docs directory, also avoiding a CRAN NOTE - Complete rebuild of pkgdown docs for release | |||||
2023-05-08 | Fix obtaining endpoints for user defined covariate values | Johannes Ranke | 2 | -3/+6 | |
2023-04-20 | Update vignettes in dev docs | Johannes Ranke | 31 | -260/+341 | |
After the post-release fixes to the release version online docs | |||||
2023-04-20 | Switch docs back to devel mode | Johannes Ranke | 1 | -2/+2 | |
2023-04-20 | Merge branch 'v1.2.3_pkgdown' | Johannes Ranke | 272 | -1788/+15228 | |
2023-04-20 | Fix and rebuild documentation, see NEWS | Johannes Ranke | 269 | -1784/+15174 | |
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well. | |||||
2023-04-20 | Small changes to the multistart vignette | Johannes Ranke | 1 | -16/+11 | |
- Fix legend positions and y axis scaling - Include two more variants in the model comparison at the end, and fix the logic of the discussion | |||||
2023-04-17 | Post release changes to the docs | Johannes Ranke | 4 | -17/+54 | |
The cyantraniliprole and dmta pathway vignettes were not working any more with the latest changes in deSolve and mkin. All docs need a rebuild. | |||||
2023-04-17 | Bump version, add release date of v1.2.3 | Johannes Ranke | 2 | -3/+3 | |
2023-04-17 | Improve docs of multistart method | Johannes Ranke | 22 | -186/+99 | |
2023-04-16 | Bump datev1.2.3 | Johannes Ranke | 1 | -1/+1 | |
2023-04-16 | Suppress a warning about a path "(embedding)" | Johannes Ranke | 1 | -2/+4 | |
2023-04-16 | Skip another test on CRAN to save CPU cycles | Johannes Ranke | 1 | -0/+2 | |
2023-04-16 | Complete rebuild of static docs | Johannes Ranke | 213 | -1253/+3513 | |
2023-04-16 | Add coverage target for local coverage report | Johannes Ranke | 3 | -0/+6 | |
I get almost 90% when testing locally | |||||
2023-04-16 | Make travis wait longer also for codecov coverage | Johannes Ranke | 1 | -1/+1 | |
2023-04-16 | Make the template work on Windows (with RStudio) | Johannes Ranke | 1 | -4/+8 | |
It seems that we cannot use stored DLLs (for pathway fits) on clusters when using Windows, where we use PSOCK clusters. Although it works on winbuilder in the tests in tests/testthat/test_compiled.R. Maybe it is something RStudio specific. | |||||
2023-04-16 | Skip the Eigenvalue based saem test | Johannes Ranke | 2 | -13/+18 | |
It took too long, and this solution method is not recommended. We are saving 140 seconds here on my system, so more time is saved on travis. | |||||
2023-04-15 | Need even more time for tests now | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | Fix the travis_wait command | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | The tests run longer now, so make travis wait | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | Increase test coverage | Johannes Ranke | 6 | -20/+92 | |
Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered). | |||||
2023-04-15 | Update description and news | Johannes Ranke | 2 | -3/+7 | |
2023-04-15 | Fix logic in test | Johannes Ranke | 1 | -1/+1 | |
2023-04-15 | Merge branch 'codecov' | Johannes Ranke | 1 | -0/+1 | |