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2023-04-20Fix and rebuild documentation, see NEWSJohannes Ranke1-0/+0
I had to fix the two pathway vignettes, as they did not work with the released version any more. So they and the multistart vignette which got some small fixes as well were rebuilt. Complete rebuild of the online docs with the released version. The documentation of the 'hierarchial_kinetics' format had to be fixed as well.
2022-03-02Make tests more platform independent, update docsJohannes Ranke1-0/+0
2021-03-31Bug fix in plot.mkinfitJohannes Ranke1-0/+0
In residual plots, use xlab and xlim if appropriate
2020-10-15Update online docs for release versionJohannes Ranke1-0/+0
2020-05-11Avoid merge() and data.frame() in cost functionJohannes Ranke1-0/+0
also for deSolve and eigenvalue based solutions. This noticeably increases performance for these methods, see test.log and benchmark vignette.
2019-07-09Adaptations for gmkinJohannes Ranke1-0/+0
Address winbuilder check problems, update check log, update of static docs
2019-07-05Static documentation rebuilt by pkgdownJohannes Ranke1-0/+0
2019-06-04Additional algorithm "d_c", more tests, docsJohannes Ranke1-0/+0
The new algorithm tries direct optimization of the likelihood, as well as a three step procedure. In this way, we consistently get the model with the highest likelihood for SFO, DFOP and HS for all 12 new test datasets.
2019-05-07Fix hessian calculationsJohannes Ranke1-0/+0
Static documentation rebuilt by pkgdown
2019-05-07After the OLS step, use OLS parameter estimatesJohannes Ranke1-0/+0
- Fix the respective error in the code - Static documentation rebuilt by pkgdown
2019-05-02Better initials for error model parametersJohannes Ranke1-0/+0
- Also make it possible to specify initial values for error model parameters. - Run tests - Rebuild docs
2019-04-10Adapt tests, vignettes and examplesJohannes Ranke1-0/+0
- Write the NEWS - Static documentation rebuilt by pkgdown - Adapt mkinerrmin - Fix (hopefully all) remaining problems in mkinfit
2018-03-09Another rebuild of the static docsJohannes Ranke1-0/+0
Now with rbenchmark installed, to get results for the compiled_models vignette
2018-03-01Static documentation rebuilt using current pkgdown::build_site()Johannes Ranke1-0/+0
2017-11-16Use html_vignette for FOCUS_D vignette, fix addressv0.9.46.3Johannes Ranke1-0/+0
Static documentation articles rebuilt by pkgdown::build_articles()
2017-09-14Convert FOCUS Z vignette to rmarkdown/htmlJohannes Ranke1-0/+0
- Static documentation rebuilt by pkgdown::build_articles() - DESCRIPTION: Version bump and current date
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-0/+0
Again with the jranke branch of jranke/pkgdown
2016-11-18Static documentation rebuilt by pkgdown::build_site(run_dont_run = TRUE)Johannes Ranke1-0/+0
Using branch 'jranke' on jranke/pkgdown, fixing issues hadley/pgkdown#178 and hadley/pkgdown#213 Remove plot=TRUE from mkinfit calls also in dontrun sections of examples to avoid a flood png files documenting the progress of the fit.
2016-11-17Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
2016-11-03Static documentation rebuilt by pkgdown::build_site()Johannes Ranke1-0/+0
Using pkgdown with PR hadley/pkgdown#212

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