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\name{CAKE_export}
\alias{CAKE_export}
\title{
Export a list of datasets format to a CAKE study file
}
\description{
In addition to the datasets, the pathways in the degradation
model can be specified as well.
}
\usage{
CAKE_export(ds, map = c(parent = "Parent"),
links = NA,
filename = "CAKE_export.csf", path = ".", overwrite = FALSE,
study = "Codlemone aerobic soil degradation",
description = "",
time_unit = "days",
res_unit = "\% AR",
comment = "Created using mkin::CAKE_export",
date = Sys.Date(),
optimiser = "IRLS")
}
\arguments{
\item{ds}{
A named list of datasets in long format as compatible with
\code{\link{mkinfit}}.
}
\item{map}{
A character vector with CAKE compartment names (Parent, A1, ...),
named with the names used in the list of datasets.
}
\item{links}{
An optional character vector of target compartments, named with
the names of the source compartments. In order to make this
easier, the names are used as in the datasets supplied.
}
\item{filename}{
Where to write the result. Should end in .csf in order to be compatible
with CAKE.
}
\item{path}{
An optional path to the output file.
}
\item{overwrite}{
If TRUE, existing files are overwritten.
}
\item{study}{
The name of the study.
}
\item{description}{
An optional description.
}
\item{time_unit}{
The time unit for the residue data.
}
\item{res_unit}{
The unit used for the residues.
}
\item{comment}{
An optional comment.
}
\item{date}{
The date of file creation.
}
\item{optimiser}{
Can be OLS or IRLS.
}
}
\value{
The function is called for its side effect.
}
\author{
Johannes Ranke
}
|
