Add some soil data for FOCUS groundwater scenarios

6 files changed, 84 insertions, 1 deletions

diff --git a/GNUmakefile b/GNUmakefile
index ccf2570..b6dbe8a 100644
--- a/GNUmakefile
+++ b/GNUmakefile
@@ -21,6 +21,7 @@ pkgfiles = pkg/DESCRIPTION \
 	   pkg/inst/testdata/* \
 		 pkg/tests/testthat.R \
 		 pkg/tests/testthat/* \
+		 pkg/data/* \
 	   pkg/R/*
 
 clean:
diff --git a/pkg/DESCRIPTION b/pkg/DESCRIPTION
index 39d3927..55e5814 100644
--- a/pkg/DESCRIPTION
+++ b/pkg/DESCRIPTION
@@ -2,7 +2,7 @@ Package: pfm
 Type: Package
 Title: Utilities for Pesticide Fate Modelling
 Version: 0.2-4
-Date: 2015-09-11
+Date: 2015-10-01
 Authors@R: person("Johannes Ranke", email = "jranke@uni-bremen.de", 
                   role = c("aut", "cre", "cph"))
 Description: Utilities for simple calculations of predicted environmental
diff --git a/pkg/R/FOCUS_GW_scenarios_2012.R b/pkg/R/FOCUS_GW_scenarios_2012.R
new file mode 100644
index 0000000..4e03572
--- /dev/null
+++ b/pkg/R/FOCUS_GW_scenarios_2012.R
@@ -0,0 +1,9 @@
+#' A very small subset of the FOCUS Groundwater scenario defitions
+#' 
+#' Currently, only a small subset of the soil definitions are provided.
+#' 
+#' @name FOCUS_GW_scenarios_2012
+#' @references FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. 
+#'  FOrum for the Co-ordination of pesticde fate models and their USe. 
+#'  http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf
+NULL
diff --git a/pkg/data/FOCUS_GW_scenarios_2012.RData b/pkg/data/FOCUS_GW_scenarios_2012.RData
new file mode 100644
index 0000000..a0487c1
--- /dev/null
+++ b/pkg/data/FOCUS_GW_scenarios_2012.RData
diff --git a/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R b/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R
new file mode 100644
index 0000000..3715325
--- /dev/null
+++ b/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R
@@ -0,0 +1,59 @@
+# FOCUS 2012 p. 46 ff
+FOCUS_GW_scenarios_2012 = list()
+
+n_layers = c(7, 6, 6, 5, 5, 6, 4, 6, 6)
+acronyms = c("Cha", "Ham", "Jok", "Kre", "Oke", "Pia", "Por", "Sev", "Thi")
+FOCUS_GW_scenarios_2012$names = c("Ch\u00e2teadun", "Hamburg", "Jokioinen",
+                                  "Kremsm\u00fcnster", "Okehampton",
+                                  "Piacenza", "Porto", "Sevilla", "Thiva")
+
+names(FOCUS_GW_scenarios_2012$names) = acronyms
+FOCUS_GW_scenarios_2012$soils <- data.frame(
+  location= rep(acronyms, times = n_layers),
+  horizon = c("Ap", "B1", "B2", "II C1", "II C1", "II C2", "M",
+              "Ap", "BvI", "BvII", "Bv/Cv", "Cv", "Cv",
+              "Ap", "Bs", "BC1", "BC2", "BC2", "Cg",
+              rep(NA, 5),
+              "A", "Bw1", "BC", "C", "C",
+              "Ap", "Ap", "Bw", "Bw", "2C", "2C",
+              rep(NA, 4),
+              rep(NA, 6),
+              "Ap1", "Ap2", "Bw", "Bw", "Ck1", "Ck1"),
+  number = unlist(sapply(n_layers, function(x) 1:x)),
+  pH_H2O = c(8.0, 8.1, 8.2, 8.5, 8.5, 8.5, 8.3,
+             6.4, 5.6, 5.6, 5.7, 5.5, 5.5,
+             6.2, 5.6, 5.4, 5.4, 5.4, 5.3,
+             7.7, 7.0, 7.1, 7.1, 7.1,
+             5.8, 6.3, 6.5, 6.6, 6.6,
+             7, 7, 6.3, 6.3, 6.4, 6.4,
+             4.9, 4.8, 4.8, 4.8,
+             7.3, 7.3, 7.8, 8.1, 8.1, 8.2,
+             7.7, 7.7, 7.8, 7.8, 7.8, 7.8),
+  perc_clay = c(30, 31, 25, 26, 26, 24, 31,
+                7.2, 6.7, 0.9, 0, 0, 0,
+                3.6, 1.8, 1.2, 1.7, 1.7, 1.9,
+                14, 25, 27, 27, 27,
+                18, 17, 14, 9, 9,
+                15, 15, 7, 7, 0, 0,
+                10, 8, 8, 8,
+                14, 13, 15, 16, 16, 22,
+                25.3, 25.3, 29.6, 31.9, 32.9, 32.9),
+  perc_oc = c(1.39, 0.93, 0.7, 0.3, 0.3, 0.27, 0.21,
+              1.5, 1, 0.2, 0, 0, 0,
+              4.06, 0.84, 0.36, 0.29, 0.29, 0.21,
+              3.6, 1.0, 0.5, 0.5, 0.5,
+              2.2, 0.7, 0.4, 0.1, 0.1,
+              1.26, 1.26, 0.47, 0.47, 0, 0,
+              1.42, 0.78, 0.78, 0.78,
+              0.93, 0.93, 0.70, 0.58, 0.58, 0.49,
+              0.74, 0.74, 0.57, 0.31, 0.18, 0.18),
+  rel_deg = c(1, 0.5, 0.5, 0.3, 0, 0, 0,
+              1, 0.5, 0.3, 0.3, 0.3, 0,
+              1, 0.5, 0.3, 0.3, 0, 0,
+              1, 0.5, 0.5, 0.3, 0,
+              1, 0.5, 0.3, 0.3, 0,
+              1, 0.5, 0.5, 0.3, 0.3, 0,
+              1, 0.5, 0.3, 0,
+              1, 1, 0.5, 0.3, 0, 0,
+              1, 0.5, 0.5, 0.3, 0.3, 0))
+save(FOCUS_GW_scenarios_2012, file = "../../data/FOCUS_GW_scenarios_2012.RData")
diff --git a/pkg/man/FOCUS_GW_scenarios_2012.Rd b/pkg/man/FOCUS_GW_scenarios_2012.Rd
new file mode 100644
index 0000000..5fcf4b1
--- /dev/null
+++ b/pkg/man/FOCUS_GW_scenarios_2012.Rd
@@ -0,0 +1,14 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/FOCUS_GW_scenarios_2012.R
+\name{FOCUS_GW_scenarios_2012}
+\alias{FOCUS_GW_scenarios_2012}
+\title{A very small subset of the FOCUS Groundwater scenario defitions}
+\description{
+Currently, only a small subset of the soil definitions are provided.
+}
+\references{
+FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1.
+ FOrum for the Co-ordination of pesticde fate models and their USe.
+ http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf
+}
+