diff options
| -rw-r--r-- | GNUmakefile | 1 | ||||
| -rw-r--r-- | pkg/DESCRIPTION | 2 | ||||
| -rw-r--r-- | pkg/R/FOCUS_GW_scenarios_2012.R | 9 | ||||
| -rw-r--r-- | pkg/data/FOCUS_GW_scenarios_2012.RData | bin | 0 -> 992 bytes | |||
| -rw-r--r-- | pkg/inst/extdata/FOCUS_GW_scenarios_2012.R | 59 | ||||
| -rw-r--r-- | pkg/man/FOCUS_GW_scenarios_2012.Rd | 14 |
6 files changed, 84 insertions, 1 deletions
diff --git a/GNUmakefile b/GNUmakefile index ccf2570..b6dbe8a 100644 --- a/GNUmakefile +++ b/GNUmakefile @@ -21,6 +21,7 @@ pkgfiles = pkg/DESCRIPTION \ pkg/inst/testdata/* \ pkg/tests/testthat.R \ pkg/tests/testthat/* \ + pkg/data/* \ pkg/R/* clean: diff --git a/pkg/DESCRIPTION b/pkg/DESCRIPTION index 39d3927..55e5814 100644 --- a/pkg/DESCRIPTION +++ b/pkg/DESCRIPTION @@ -2,7 +2,7 @@ Package: pfm Type: Package Title: Utilities for Pesticide Fate Modelling Version: 0.2-4 -Date: 2015-09-11 +Date: 2015-10-01 Authors@R: person("Johannes Ranke", email = "jranke@uni-bremen.de", role = c("aut", "cre", "cph")) Description: Utilities for simple calculations of predicted environmental diff --git a/pkg/R/FOCUS_GW_scenarios_2012.R b/pkg/R/FOCUS_GW_scenarios_2012.R new file mode 100644 index 0000000..4e03572 --- /dev/null +++ b/pkg/R/FOCUS_GW_scenarios_2012.R @@ -0,0 +1,9 @@ +#' A very small subset of the FOCUS Groundwater scenario defitions +#' +#' Currently, only a small subset of the soil definitions are provided. +#' +#' @name FOCUS_GW_scenarios_2012 +#' @references FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. +#' FOrum for the Co-ordination of pesticde fate models and their USe. +#' http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf +NULL diff --git a/pkg/data/FOCUS_GW_scenarios_2012.RData b/pkg/data/FOCUS_GW_scenarios_2012.RData Binary files differnew file mode 100644 index 0000000..a0487c1 --- /dev/null +++ b/pkg/data/FOCUS_GW_scenarios_2012.RData diff --git a/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R b/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R new file mode 100644 index 0000000..3715325 --- /dev/null +++ b/pkg/inst/extdata/FOCUS_GW_scenarios_2012.R @@ -0,0 +1,59 @@ +# FOCUS 2012 p. 46 ff +FOCUS_GW_scenarios_2012 = list() + +n_layers = c(7, 6, 6, 5, 5, 6, 4, 6, 6) +acronyms = c("Cha", "Ham", "Jok", "Kre", "Oke", "Pia", "Por", "Sev", "Thi") +FOCUS_GW_scenarios_2012$names = c("Ch\u00e2teadun", "Hamburg", "Jokioinen", + "Kremsm\u00fcnster", "Okehampton", + "Piacenza", "Porto", "Sevilla", "Thiva") + +names(FOCUS_GW_scenarios_2012$names) = acronyms +FOCUS_GW_scenarios_2012$soils <- data.frame( + location= rep(acronyms, times = n_layers), + horizon = c("Ap", "B1", "B2", "II C1", "II C1", "II C2", "M", + "Ap", "BvI", "BvII", "Bv/Cv", "Cv", "Cv", + "Ap", "Bs", "BC1", "BC2", "BC2", "Cg", + rep(NA, 5), + "A", "Bw1", "BC", "C", "C", + "Ap", "Ap", "Bw", "Bw", "2C", "2C", + rep(NA, 4), + rep(NA, 6), + "Ap1", "Ap2", "Bw", "Bw", "Ck1", "Ck1"), + number = unlist(sapply(n_layers, function(x) 1:x)), + pH_H2O = c(8.0, 8.1, 8.2, 8.5, 8.5, 8.5, 8.3, + 6.4, 5.6, 5.6, 5.7, 5.5, 5.5, + 6.2, 5.6, 5.4, 5.4, 5.4, 5.3, + 7.7, 7.0, 7.1, 7.1, 7.1, + 5.8, 6.3, 6.5, 6.6, 6.6, + 7, 7, 6.3, 6.3, 6.4, 6.4, + 4.9, 4.8, 4.8, 4.8, + 7.3, 7.3, 7.8, 8.1, 8.1, 8.2, + 7.7, 7.7, 7.8, 7.8, 7.8, 7.8), + perc_clay = c(30, 31, 25, 26, 26, 24, 31, + 7.2, 6.7, 0.9, 0, 0, 0, + 3.6, 1.8, 1.2, 1.7, 1.7, 1.9, + 14, 25, 27, 27, 27, + 18, 17, 14, 9, 9, + 15, 15, 7, 7, 0, 0, + 10, 8, 8, 8, + 14, 13, 15, 16, 16, 22, + 25.3, 25.3, 29.6, 31.9, 32.9, 32.9), + perc_oc = c(1.39, 0.93, 0.7, 0.3, 0.3, 0.27, 0.21, + 1.5, 1, 0.2, 0, 0, 0, + 4.06, 0.84, 0.36, 0.29, 0.29, 0.21, + 3.6, 1.0, 0.5, 0.5, 0.5, + 2.2, 0.7, 0.4, 0.1, 0.1, + 1.26, 1.26, 0.47, 0.47, 0, 0, + 1.42, 0.78, 0.78, 0.78, + 0.93, 0.93, 0.70, 0.58, 0.58, 0.49, + 0.74, 0.74, 0.57, 0.31, 0.18, 0.18), + rel_deg = c(1, 0.5, 0.5, 0.3, 0, 0, 0, + 1, 0.5, 0.3, 0.3, 0.3, 0, + 1, 0.5, 0.3, 0.3, 0, 0, + 1, 0.5, 0.5, 0.3, 0, + 1, 0.5, 0.3, 0.3, 0, + 1, 0.5, 0.5, 0.3, 0.3, 0, + 1, 0.5, 0.3, 0, + 1, 1, 0.5, 0.3, 0, 0, + 1, 0.5, 0.5, 0.3, 0.3, 0)) +save(FOCUS_GW_scenarios_2012, file = "../../data/FOCUS_GW_scenarios_2012.RData") diff --git a/pkg/man/FOCUS_GW_scenarios_2012.Rd b/pkg/man/FOCUS_GW_scenarios_2012.Rd new file mode 100644 index 0000000..5fcf4b1 --- /dev/null +++ b/pkg/man/FOCUS_GW_scenarios_2012.Rd @@ -0,0 +1,14 @@ +% Generated by roxygen2 (4.1.1): do not edit by hand +% Please edit documentation in R/FOCUS_GW_scenarios_2012.R +\name{FOCUS_GW_scenarios_2012} +\alias{FOCUS_GW_scenarios_2012} +\title{A very small subset of the FOCUS Groundwater scenario defitions} +\description{ +Currently, only a small subset of the soil definitions are provided. +} +\references{ +FOCUS (2012) Generic guidance for Tier 1 FOCUS ground water assessments. Version 2.1. + FOrum for the Co-ordination of pesticde fate models and their USe. + http://focus.jrc.ec.europa.eu/gw/docs/Generic_guidance_FOCV2_1.pdf +} + |