Update online docs

1 files changed, 39 insertions, 0 deletions

diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html
index 4987f15..3410ac4 100644
--- a/docs/reference/one_box.html
+++ b/docs/reference/one_box.html
@@ -53,6 +53,17 @@
 <span><span class="co"># S3 method for class 'character'</span></span>
 <span><span class="fu">one_box</span><span class="op">(</span><span class="va">x</span>, ini <span class="op">=</span> <span class="fl">1</span>, <span class="va">parms</span>, <span class="va">...</span>, t_end <span class="op">=</span> <span class="fl">100</span>, res <span class="op">=</span> <span class="fl">0.01</span><span class="op">)</span></span>
 <span></span>
+<span><span class="co"># S3 method for class 'mkinmod'</span></span>
+<span><span class="fu">one_box</span><span class="op">(</span></span>
+<span>  <span class="va">x</span>,</span>
+<span>  ini <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="va">x</span><span class="op">$</span><span class="va">diffs</span><span class="op">)</span> <span class="op">-</span> <span class="fl">1</span><span class="op">)</span><span class="op">)</span>,</span>
+<span>  <span class="va">odeparms</span>,</span>
+<span>  solution_type <span class="op">=</span> <span class="st">"deSolve"</span>,</span>
+<span>  <span class="va">...</span>,</span>
+<span>  t_end <span class="op">=</span> <span class="fl">100</span>,</span>
+<span>  res <span class="op">=</span> <span class="fl">0.01</span></span>
+<span><span class="op">)</span></span>
+<span></span>
 <span><span class="co"># S3 method for class 'mkinfit'</span></span>
 <span><span class="fu">one_box</span><span class="op">(</span><span class="va">x</span>, ini <span class="op">=</span> <span class="st">"model"</span>, <span class="va">...</span>, t_end <span class="op">=</span> <span class="fl">100</span>, res <span class="op">=</span> <span class="fl">0.01</span><span class="op">)</span></span></code></pre></div>
     </div>
@@ -92,6 +103,14 @@ all observed variables.</p></dd>
 <dt id="arg-parms">parms<a class="anchor" aria-label="anchor" href="#arg-parms"></a></dt>
 <dd><p>A named numeric vector containing the model parameters</p></dd>
 
+
+<dt id="arg-odeparms">odeparms<a class="anchor" aria-label="anchor" href="#arg-odeparms"></a></dt>
+<dd><p>Will be passed to <a href="https://pkgdown.jrwb.de/mkin/reference/mkinpredict.html" class="external-link">mkinpredict</a></p></dd>
+
+
+<dt id="arg-solution-type">solution_type<a class="anchor" aria-label="anchor" href="#arg-solution-type"></a></dt>
+<dd><p>Will be passed to <a href="https://pkgdown.jrwb.de/mkin/reference/mkinpredict.html" class="external-link">mkinpredict</a></p></dd>
+
 </dl></div>
     <div class="section level2">
     <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
@@ -120,6 +139,26 @@ all observed variables.</p></dd>
 <span class="r-in"><span><span class="va">pred_2</span> <span class="op">&lt;-</span> <span class="fu">one_box</span><span class="op">(</span><span class="va">fit_2</span>, ini <span class="op">=</span> <span class="st">"model"</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">pred_2</span><span class="op">)</span></span></span>
 <span class="r-plt img"><img src="one_box-3.png" alt="" width="700" height="433"></span>
+<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://pkgdown.jrwb.de/mkin/" class="external-link">mkin</a></span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">SFO_SFO</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinmod</a></span><span class="op">(</span></span></span>
+<span class="r-in"><span>  parent <span class="op">=</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, to <span class="op">=</span> <span class="st">"m1"</span><span class="op">)</span>,</span></span>
+<span class="r-in"><span>  m1 <span class="op">=</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Temporary DLL for differentials generated and loaded</span>
+<span class="r-in"><span><span class="va">c_0</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>parent <span class="op">=</span> <span class="fl">100</span>, m1 <span class="op">=</span> <span class="fl">0</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">deg_parms</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>k_parent <span class="op">=</span> <span class="fl">0.15</span>, f_parent_to_m1 <span class="op">=</span> <span class="fl">0.5</span>, k_m1 <span class="op">=</span> <span class="fl">0.01</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">sfo_sfo_box</span> <span class="op">&lt;-</span> <span class="fu">one_box</span><span class="op">(</span><span class="va">SFO_SFO</span>, odeparms <span class="op">=</span> <span class="va">deg_parms</span>, ini <span class="op">=</span> <span class="va">c_0</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">sfo_sfo_box</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Time Series:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Start = c(0, 1) </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> End = c(0, 6) </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Frequency = 100 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         parent         m1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.00 100.00000 0.00000000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.01  99.85011 0.07494003</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.02  99.70045 0.14976024</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.03  99.55101 0.22446081</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.04  99.40180 0.29904192</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 0.05  99.25281 0.37350376</span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>