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| author | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-18 22:41:01 +0100 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2017-01-18 22:50:14 +0100 |
| commit | a76221d87485029444c8e684022ca606a0c7e68d (patch) | |
| tree | c95052ee51b35f6c5ab87bd6f27ef2877f536838 /docs/reference/soil_scenario_data_EFSA_2015.html | |
| parent | a1d9f93138c2cfed92a683e37e72c737d52b7ad7 (diff) | |
Update static docs using pkgdown
- Add _pkgdown.yml for a structured function/data reference
- Make seealso links active
- Make mkinfit calls quiet
- Use pkgdown branch from pull request hadley/pkgdown#229 to have topics
ordered
Diffstat (limited to 'docs/reference/soil_scenario_data_EFSA_2015.html')
| -rw-r--r-- | docs/reference/soil_scenario_data_EFSA_2015.html | 157 |
1 files changed, 157 insertions, 0 deletions
diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html new file mode 100644 index 0000000..f842d08 --- /dev/null +++ b/docs/reference/soil_scenario_data_EFSA_2015.html @@ -0,0 +1,157 @@ +<!-- Generated by pkgdown: do not edit by hand --> +<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> + +<title>Properties of the predefined scenarios from the EFSA guidance from 2015 — soil_scenario_data_EFSA_2015 • pfm</title> + +<!-- jquery --> +<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> +<!-- Bootstrap --> + +<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous"> +<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script> + +<!-- Font Awesome icons --> +<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> + + +<!-- pkgdown --> +<link href="../pkgdown.css" rel="stylesheet"> +<script src="../jquery.sticky-kit.min.js"></script> +<script src="../pkgdown.js"></script> + +<!-- mathjax --> +<script src='https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> + +<!--[if lt IE 9]> +<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> +<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> +<![endif]--> + </head> + + <body> + <div class="container template-reference-topic"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <a class="navbar-brand" href="../index.html">pfm</a> + </div> + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + + </ul> + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + + <div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Properties of the predefined scenarios from the EFSA guidance from 2015</h1> + </div> + + + <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2015, p. 13/14). Also, the +scenario and model adjustment factors from p. 15 and p. 17 are included.</p> + + + + <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + + <p>A data frame with one row for each scenario. Row names are the scenario codes, + e.g. CTN for the Northern scenario for the total concentration in soil. Columns are + mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> + + <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> + + <p>EFSA (European Food Safety Authority) (2015) +EFSA guidance document for predicting environmental concentrations +of active substances of plant protection products and transformation products of these +active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 +doi:10.2903/j.efsa.2015.4093</p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'><span class='co'>## Not run: ------------------------------------</span> +<span class='co'># # This is the code that was used to define the data</span> +<span class='co'># soil_scenario_data_EFSA_2015 <- data.frame(</span> +<span class='co'># Zone = rep(c("North", "Central", "South"), 2),</span> +<span class='co'># Country = c("Estonia", "Germany", "France", "Denmark", "Czech Republik", "Spain"),</span> +<span class='co'># T_arit = c(4.7, 8.0, 11.0, 8.2, 9.1, 12.8),</span> +<span class='co'># T_arr = c(7.0, 10.1, 12.3, 9.8, 11.2, 14.7),</span> +<span class='co'># Texture = c("Coarse", "Coarse", "Medium fine", "Medium", "Medium", "Medium"),</span> +<span class='co'># f_om = c(0.118, 0.086, 0.048, 0.023, 0.018, 0.011),</span> +<span class='co'># theta_fc = c(0.244, 0.244, 0.385, 0.347, 0.347, 0.347),</span> +<span class='co'># rho = c(0.95, 1.05, 1.22, 1.39, 1.43, 1.51),</span> +<span class='co'># f_sce = c(3, 2, 2, 2, 1.5, 1.5),</span> +<span class='co'># f_mod = c(2, 2, 2, 4, 4, 4),</span> +<span class='co'># stringsAsFactors = FALSE,</span> +<span class='co'># row.names = c("CTN", "CTC", "CTS", "CLN", "CLC", "CLS")</span> +<span class='co'># )</span> +<span class='co'># save(soil_scenario_data_EFSA_2015, file = '../data/soil_scenario_data_EFSA_2015.RData')</span> +<span class='co'>## ---------------------------------------------</span> + +<span class='co'># And this is the resulting dataframe</span> +<span class='no'>soil_scenario_data_EFSA_2015</span></div><div class='output co'>#> Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce +#> CTN North Estonia 4.7 7.0 Coarse 0.118 0.244 0.95 3.0 +#> CTC Central Germany 8.0 10.1 Coarse 0.086 0.244 1.05 2.0 +#> CTS South France 11.0 12.3 Medium fine 0.048 0.385 1.22 2.0 +#> CLN North Denmark 8.2 9.8 Medium 0.023 0.347 1.39 2.0 +#> CLC Central Czech Republik 9.1 11.2 Medium 0.018 0.347 1.43 1.5 +#> CLS South Spain 12.8 14.7 Medium 0.011 0.347 1.51 1.5 +#> f_mod +#> CTN 2 +#> CTC 2 +#> CTS 2 +#> CLN 4 +#> CLC 4 +#> CLS 4</div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + + <li><a href="#format">Format</a></li> + + <li><a href="#source">Source</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://hadley.github.io/pkgdown/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + </body> +</html> |