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authorJohannes Ranke <jranke@uni-bremen.de>2017-05-16 18:57:16 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2017-05-16 18:57:16 +0200
commitd60bb9c0b52c8e0452bfbe507e60d5f651589cc8 (patch)
treec4f81fc731fd4db34e16928ccf274541cf738b5b /docs/reference
parent14fa47b1ea1651fc2cb7bbf0086741a8004d35ee (diff)
Update static documentation
Diffstat (limited to 'docs/reference')
-rw-r--r--docs/reference/PEC_sw_focus.html57
-rw-r--r--docs/reference/PELMO_runs.html2
2 files changed, 32 insertions, 27 deletions
diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html
index c5cbfe7..28aa1bd 100644
--- a/docs/reference/PEC_sw_focus.html
+++ b/docs/reference/PEC_sw_focus.html
@@ -87,7 +87,8 @@ this implementation.</p>
<colgroup><col class="name" /><col class="desc" /></colgroup>
<tr>
<th>parent</th>
- <td><p>A list containing substance specific parameters</p></td>
+ <td><p>A list containing substance specific parameters, e.g.
+conveniently generated by <code><a href='chent_focus_sw.html'>chent_focus_sw</a></code>.</p></td>
</tr>
<tr>
<th>rate</th>
@@ -104,14 +105,15 @@ applications are given explicitly</p></td>
</tr>
<tr>
<th>met</th>
- <td><p>A list containing metabolite specific parameters. If not NULL,
+ <td><p>A list containing metabolite specific parameters. e.g.
+conveniently generated by <code><a href='chent_focus_sw.html'>chent_focus_sw</a></code>. If not NULL,
the PEC is calculated for this compound, not the parent.</p></td>
</tr>
<tr>
<th>f_drift</th>
<td><p>The fraction of the application rate reaching the waterbody
via drift. If NA, this is derived from the scenario name and the number
-of applications via the drift data defined by the
+of applications via the drift data defined by the
<code><a href='FOCUS_Step_12_scenarios.html'>FOCUS_Step_12_scenarios</a></code></p></td>
</tr>
<tr>
@@ -131,8 +133,11 @@ names given in <code><a href='FOCUS_Step_12_scenarios.html'>FOCUS_Step_12_scenar
<p>The formulas for input to the waterbody via runoff/drainage of the
parent and subsequent formation of the metabolite in water is not
- documented in the model description coming with the calculator</p>
-<p>Step 2 is not implemented</p>
+ documented in the model description coming with the calculator. As one would
+ expecte, this additional input appears to be (as we get the same results)
+ calculated by multiplying the application rate with the molar weight
+ correction and the formation fraction in water/sediment systems.</p>
+<p>Step 2 is not implemented.</p>
<h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
@@ -173,18 +178,18 @@ names given in <code><a href='FOCUS_Step_12_scenarios.html'>FOCUS_Step_12_scenar
#&gt;
#&gt; $PEC
#&gt; type
-#&gt; Time PECsw TWAECsw PECsed TWAECsed
-#&gt; 0 6.850566e+02 NA 2.362075e+03 NA
-#&gt; 1 6.103161e+02 647.6864 2.104370e+03 2233.223
-#&gt; 2 5.437298e+02 NA 1.874780e+03 NA
-#&gt; 4 4.315586e+02 NA 1.488014e+03 NA
-#&gt; 7 3.051580e+02 NA 1.052185e+03 NA
-#&gt; 14 1.359325e+02 NA 4.686951e+02 NA
-#&gt; 21 6.055102e+01 NA 2.087799e+02 NA
-#&gt; 28 2.697241e+01 NA 9.300089e+01 NA
-#&gt; 42 5.352005e+00 NA 1.845371e+01 NA
-#&gt; 50 2.123945e+00 NA 7.323361e+00 NA
-#&gt; 100 6.585062e-03 NA 2.270529e-02 NA
+#&gt; Time PECsw TWAECsw PECsed TWAECsed
+#&gt; 0 6.850566e+02 NA 2.362075e+03 NA
+#&gt; 1 6.103161e+02 647.68635 2.104370e+03 2233.2225
+#&gt; 2 5.437298e+02 612.03420 1.874780e+03 2110.2939
+#&gt; 4 4.315586e+02 548.76030 1.488014e+03 1892.1255
+#&gt; 7 3.051580e+02 469.88375 1.052185e+03 1620.1592
+#&gt; 14 1.359325e+02 339.57370 4.686951e+02 1170.8501
+#&gt; 21 6.055102e+01 257.45458 2.087799e+02 887.7034
+#&gt; 28 2.697241e+01 203.47173 9.300089e+01 701.5705
+#&gt; 42 5.352005e+00 140.10377 1.845371e+01 483.0778
+#&gt; 50 2.123945e+00 118.24602 7.323361e+00 407.7123
+#&gt; 100 6.585062e-03 59.30629 2.270529e-02 204.4881
#&gt;
#&gt; $PEC_sw_max
#&gt; [1] 685.0566
@@ -224,15 +229,15 @@ names given in <code><a href='FOCUS_Step_12_scenarios.html'>FOCUS_Step_12_scenar
#&gt; Time PECsw TWAECsw PECsed TWAECsed
#&gt; 0 62.50000 NA 31.25000 NA
#&gt; 1 62.06828 62.28414 31.03414 31.14207
-#&gt; 2 61.63954 NA 30.81977 NA
-#&gt; 4 60.79093 NA 30.39547 NA
-#&gt; 7 59.53987 NA 29.76994 NA
-#&gt; 14 56.71995 NA 28.35997 NA
-#&gt; 21 54.03358 NA 27.01679 NA
-#&gt; 28 51.47444 NA 25.73722 NA
-#&gt; 42 46.71404 NA 23.35702 NA
-#&gt; 50 44.19417 NA 22.09709 NA
-#&gt; 100 31.25000 NA 15.62500 NA
+#&gt; 2 61.63954 62.06890 30.81977 31.03445
+#&gt; 4 60.79093 61.64158 30.39547 30.82079
+#&gt; 7 59.53987 61.00800 29.76994 30.50400
+#&gt; 14 56.71995 59.56326 28.35997 29.78163
+#&gt; 21 54.03358 58.16414 27.01679 29.08207
+#&gt; 28 51.47444 56.80902 25.73722 28.40451
+#&gt; 42 46.71404 54.22460 23.35702 27.11230
+#&gt; 50 44.19417 52.81945 22.09709 26.40973
+#&gt; 100 31.25000 45.08422 15.62500 22.54211
#&gt;
#&gt; $PEC_sw_max
#&gt; [1] 62.5
diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html
index 7fcbba8..ed7975e 100644
--- a/docs/reference/PELMO_runs.html
+++ b/docs/reference/PELMO_runs.html
@@ -144,7 +144,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p>
<h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
- <p>PELMO.installeR <a href = 'https://jranke.github.io/PELMO.installeR'>https://jranke.github.io/PELMO.installeR</a></p>
+ <p>PELMO.installeR <a href = 'https://pkgdown.jrwb.de/PELMO.installeR'>https://pkgdown.jrwb.de/PELMO.installeR</a></p>
<p>Wine <a href = 'https://winehq.org'>https://winehq.org</a></p>
<p>PELMO test results <a href = 'http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/gw/models/pelmo/test-results/test_results_FOCUS_PELMO_5_5_3.doc'>http://esdac.jrc.ec.europa.eu/public_path/projects_data/focus/gw/models/pelmo/test-results/test_results_FOCUS_PELMO_5_5_3.doc</a></p>

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