diff options
| author | Johannes Ranke <jranke@uni-bremen.de> | 2019-04-25 11:50:35 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2019-04-25 11:50:35 +0200 |
| commit | 451b332c8888bac8279340b086abb3b714ac3ae1 (patch) | |
| tree | 9704ae10e8670ff7ec750e612d223739ebafa316 /docs | |
| parent | 3bb842b93107dd6207610de1fe5b44be66779e4d (diff) | |
Add more drift data, especially 3 m field crop data
To support Agroscope in doing lots of PEC calculations for Switzerland
Diffstat (limited to 'docs')
41 files changed, 337 insertions, 164 deletions
diff --git a/docs/authors.html b/docs/authors.html index 977f810..066d25f 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -60,7 +60,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -117,7 +117,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/index.html b/docs/index.html index 4a41dde..0220e80 100644 --- a/docs/index.html +++ b/docs/index.html @@ -32,7 +32,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -75,12 +75,12 @@ <h2 class="hasAnchor"> <a href="#installation" class="anchor"></a>Installation</h2> <p>The easiest way to install the package is probably to use <a href="https://cran.r-project.org/package=drat">drat</a>:</p> -<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"drat"</span>)</a> -<a class="sourceLine" id="cb1-2" data-line-number="2">drat<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>)</a> -<a class="sourceLine" id="cb1-3" data-line-number="3"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"pfm"</span>)</a></code></pre></div> +<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"drat"</span>)</a> +<a class="sourceLine" id="cb1-2" title="2">drat<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>)</a> +<a class="sourceLine" id="cb1-3" title="3"><span class="kw"><a href="https://www.rdocumentation.org/packages/utils/topics/install.packages">install.packages</a></span>(<span class="st">"pfm"</span>)</a></code></pre></div> <p>Alternatively you can install the package using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes.</p> -<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb2-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(devtools)</a> -<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/devtools/topics/reexports">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</a></code></pre></div> +<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb2-1" title="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(devtools)</a> +<a class="sourceLine" id="cb2-2" title="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/devtools/topics/reexports">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</a></code></pre></div> </div> <div id="use" class="section level2"> <h2 class="hasAnchor"> @@ -131,7 +131,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 1dc6ec1..354fdca 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,5 +1,5 @@ pandoc: 2.2.1 -pkgdown: 1.3.0 +pkgdown: 1.3.0.9000 pkgdown_sha: ~ articles: [] diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index d60f44f..722971a 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -64,7 +64,7 @@ soil definitions are from page 46ff. from FOCUS (2012)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -207,7 +207,7 @@ soil definitions are from page 46ff. from FOCUS (2012).</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index 2020899..53e0570 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -64,7 +64,7 @@ The text file is not included in the package as its licence is not clear." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -310,7 +310,7 @@ The text file is not included in the package as its licence is not clear.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html index 9963761..6826618 100644 --- a/docs/reference/FOMC_actual_twa.html +++ b/docs/reference/FOMC_actual_twa.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -172,7 +172,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index 18f59be..1a5da20 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -65,7 +65,7 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -234,7 +234,7 @@ toxicology and chemistry</em> <b>8</b>(4) 339–57.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_FOMC_accu_rel.html b/docs/reference/PEC_FOMC_accu_rel.html index a81683d..2c3be54 100644 --- a/docs/reference/PEC_FOMC_accu_rel.html +++ b/docs/reference/PEC_FOMC_accu_rel.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -152,7 +152,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html index db09110..bef0f05 100644 --- a/docs/reference/PEC_soil.html +++ b/docs/reference/PEC_soil.html @@ -67,7 +67,7 @@ and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -358,7 +358,7 @@ from 2017 (p. 92).</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_soil_mets.html b/docs/reference/PEC_soil_mets.html index e60cc70..5ca7de4 100644 --- a/docs/reference/PEC_soil_mets.html +++ b/docs/reference/PEC_soil_mets.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -156,7 +156,7 @@ maximum occurrence in soil and their soil DT50</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html index b924c99..609a524 100644 --- a/docs/reference/PEC_sw_drainage_UK.html +++ b/docs/reference/PEC_sw_drainage_UK.html @@ -64,7 +64,7 @@ published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -179,7 +179,7 @@ published on the CRC website</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html index cb16371..829e949 100644 --- a/docs/reference/PEC_sw_drift.html +++ b/docs/reference/PEC_sw_drift.html @@ -65,7 +65,7 @@ with input via spray drift." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -191,7 +191,7 @@ with input via spray drift.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_exposit_drainage.html b/docs/reference/PEC_sw_exposit_drainage.html index 62d83fa..d496268 100644 --- a/docs/reference/PEC_sw_exposit_drainage.html +++ b/docs/reference/PEC_sw_exposit_drainage.html @@ -69,7 +69,7 @@ details, see the discussion of the function arguments below." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -227,7 +227,7 @@ autumn/winter/early spring.</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html index 3d7097a..c518de7 100644 --- a/docs/reference/PEC_sw_exposit_runoff.html +++ b/docs/reference/PEC_sw_exposit_runoff.html @@ -64,7 +64,7 @@ in the worksheet "Konzept Runoff"." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -220,7 +220,7 @@ in the worksheet "Konzept Runoff".</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html index 138e223..1152559 100644 --- a/docs/reference/PEC_sw_focus.html +++ b/docs/reference/PEC_sw_focus.html @@ -69,7 +69,7 @@ to be used with the FOCUS calculator." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -355,7 +355,7 @@ should be written</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html index 2e4fddc..679af8d 100644 --- a/docs/reference/PEC_sw_sed.html +++ b/docs/reference/PEC_sw_sed.html @@ -66,7 +66,7 @@ PEC calculator" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -184,7 +184,7 @@ g/cm3)</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html index 1361ded..16da2f9 100644 --- a/docs/reference/SFO_actual_twa.html +++ b/docs/reference/SFO_actual_twa.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -168,7 +168,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html index 5c78362..6228b14 100644 --- a/docs/reference/SSLRC_mobility_classification.html +++ b/docs/reference/SSLRC_mobility_classification.html @@ -64,7 +64,7 @@ checked against the spreadsheet published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -158,7 +158,7 @@ checked against the spreadsheet published on the CRC website</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html index 357fb59..c6e0e64 100644 --- a/docs/reference/TOXSWA_cwa.html +++ b/docs/reference/TOXSWA_cwa.html @@ -64,7 +64,7 @@ Usually, an instance of this class will be generated by read.TOXSWA_cwa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -202,7 +202,7 @@ for the requested moving window sizes in days.</p></dd> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/chent_focus_sw.html b/docs/reference/chent_focus_sw.html index f4c2281..24745a4 100644 --- a/docs/reference/chent_focus_sw.html +++ b/docs/reference/chent_focus_sw.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -184,7 +184,7 @@ systems</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html index 1b44852..3e9e367 100644 --- a/docs/reference/drift_data_JKI.html +++ b/docs/reference/drift_data_JKI.html @@ -66,7 +66,7 @@ published by the German Julius-Kühn Institute (JKI)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -158,107 +158,283 @@ as its licence is not clear.</p> <span class='co'># And this is the resulting data</span> <span class='no'>drift_data_JKI</span></div><div class='output co'>#> [[1]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 2.77 NA NA -#> 3 NA 29.20 15.73 -#> 5 0.57 19.89 8.41 -#> 10 0.29 11.81 3.60 -#> 15 0.20 5.55 1.81 -#> 20 0.15 2.77 1.09 -#> 30 0.10 1.04 0.54 -#> 40 0.07 0.52 0.32 -#> 50 0.06 0.30 0.22 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 2.77 NA NA NA NA +#> 3 0.95 29.20 15.73 8.02 19.33 +#> 5 0.57 19.89 8.41 3.62 11.57 +#> 10 0.29 11.81 3.60 1.23 5.77 +#> 15 0.20 5.55 1.81 0.65 3.84 +#> 20 0.15 2.77 1.09 0.42 1.79 +#> 30 0.10 1.04 0.54 0.22 0.56 +#> 40 0.07 0.52 0.32 0.14 0.25 +#> 50 0.06 0.30 0.22 0.10 0.13 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 4.440 2.77 +#> 3 NA NA +#> 5 0.180 0.57 +#> 10 0.050 0.29 +#> 15 0.020 0.20 +#> 20 0.012 0.15 +#> 30 0.005 0.10 +#> 40 0.003 0.07 +#> 50 0.002 0.06 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 0.039 NA NA +#> 3 NA 8.02 0.018721696 +#> 5 0.005 3.62 0.014363896 +#> 10 NA 1.23 0.010026007 +#> 15 NA 0.65 0.008124366 +#> 20 NA 0.42 0.006998158 +#> 30 NA 0.22 0.005670811 +#> 40 NA 0.14 NA +#> 50 NA 0.10 0.004350831 #> #> [[2]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 2.38 NA NA -#> 3 NA 25.53 12.13 -#> 5 0.47 16.87 6.81 -#> 10 0.24 9.61 3.11 -#> 15 0.16 5.61 1.58 -#> 20 0.12 2.59 0.90 -#> 30 0.08 0.87 0.40 -#> 40 0.06 0.40 0.23 -#> 50 0.05 0.22 0.15 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 2.38 NA NA NA NA +#> 3 0.79 25.53 12.13 7.23 17.73 +#> 5 0.47 16.87 6.81 3.22 9.60 +#> 10 0.24 9.61 3.11 1.07 4.18 +#> 15 0.16 5.61 1.58 0.56 2.57 +#> 20 0.12 2.59 0.90 0.36 1.21 +#> 30 0.08 0.87 0.40 0.19 0.38 +#> 40 0.06 0.40 0.23 0.12 0.17 +#> 50 0.05 0.22 0.15 0.08 0.09 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 3.780 2.38 +#> 3 NA NA +#> 5 0.160 0.47 +#> 10 0.040 0.24 +#> 15 0.020 0.16 +#> 20 0.011 0.12 +#> 30 0.005 0.08 +#> 40 0.003 0.06 +#> 50 0.002 0.05 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1900 NA +#> 3 7.23 NA 2.120 +#> 5 3.22 0.0100 0.470 +#> 10 1.07 0.0030 0.060 +#> 15 0.56 0.0010 0.020 +#> 20 0.36 0.0008 0.008 +#> 30 0.19 NA NA +#> 40 0.12 NA NA +#> 50 0.08 NA NA #> #> [[3]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 2.01 NA NA -#> 3 NA 23.96 11.01 -#> 5 0.41 15.79 6.04 -#> 10 0.20 8.96 2.67 -#> 15 0.14 4.24 1.39 -#> 20 0.10 2.01 0.80 -#> 30 0.07 0.70 0.36 -#> 40 0.05 0.33 0.21 -#> 50 0.04 0.19 0.13 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 2.01 NA NA NA NA +#> 3 0.68 23.96 11.01 6.90 15.93 +#> 5 0.41 15.79 6.04 3.07 8.57 +#> 10 0.20 8.96 2.67 1.02 3.70 +#> 15 0.14 4.24 1.39 0.54 2.26 +#> 20 0.10 2.01 0.80 0.34 1.05 +#> 30 0.07 0.70 0.36 0.18 0.34 +#> 40 0.05 0.33 0.21 0.11 0.15 +#> 50 0.04 0.19 0.13 0.08 0.08 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 3.420 2.01 +#> 3 NA NA +#> 5 0.150 0.41 +#> 10 0.040 0.20 +#> 15 0.020 0.14 +#> 20 0.010 0.10 +#> 30 0.004 0.07 +#> 40 0.003 0.05 +#> 50 0.002 0.04 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1400 NA +#> 3 6.90 NA 1.590 +#> 5 3.07 0.0100 0.360 +#> 10 1.02 0.0020 0.050 +#> 15 0.54 0.0010 0.010 +#> 20 0.34 0.0006 0.006 +#> 30 0.18 NA NA +#> 40 0.11 NA NA +#> 50 0.08 NA NA #> #> [[4]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 1.85 NA NA -#> 3 NA 23.61 10.12 -#> 5 0.38 15.42 5.60 -#> 10 0.19 8.66 2.50 -#> 15 0.13 4.01 1.28 -#> 20 0.10 1.89 0.75 -#> 30 0.06 0.66 0.35 -#> 40 0.05 0.31 0.20 -#> 50 0.04 0.17 0.13 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 1.85 NA NA NA NA +#> 3 0.62 23.61 10.12 6.71 15.38 +#> 5 0.38 15.42 5.60 2.99 8.26 +#> 10 0.19 8.66 2.50 0.99 3.55 +#> 15 0.13 4.01 1.28 0.52 2.17 +#> 20 0.10 1.89 0.75 0.33 0.93 +#> 30 0.06 0.66 0.35 0.17 0.31 +#> 40 0.05 0.31 0.20 0.11 0.14 +#> 50 0.04 0.17 0.13 0.08 0.08 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 2.290 1.85 +#> 3 NA NA +#> 5 0.120 0.38 +#> 10 0.030 0.19 +#> 15 0.020 0.13 +#> 20 0.009 0.10 +#> 30 0.004 0.06 +#> 40 0.002 0.05 +#> 50 0.002 0.04 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1300 NA +#> 3 6.71 NA 1.360 +#> 5 2.99 0.0100 0.310 +#> 10 0.99 0.0020 0.040 +#> 15 0.52 0.0010 0.010 +#> 20 0.33 0.0005 0.005 +#> 30 0.17 NA NA +#> 40 0.11 NA NA +#> 50 0.08 NA NA #> #> [[5]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 1.75 NA NA -#> 3 NA 23.12 9.74 -#> 5 0.36 15.06 5.41 -#> 10 0.18 8.42 2.43 -#> 15 0.12 3.83 1.24 -#> 20 0.09 1.81 0.72 -#> 30 0.06 0.63 0.34 -#> 40 0.05 0.30 0.20 -#> 50 0.04 0.17 0.13 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 1.75 NA NA NA NA +#> 3 0.59 23.12 9.74 6.59 15.12 +#> 5 0.36 15.06 5.41 2.93 7.99 +#> 10 0.18 8.42 2.43 0.98 3.36 +#> 15 0.12 3.83 1.24 0.51 2.03 +#> 20 0.09 1.81 0.72 0.33 0.88 +#> 30 0.06 0.63 0.34 0.17 0.29 +#> 40 0.05 0.30 0.20 0.11 0.14 +#> 50 0.04 0.17 0.13 0.08 0.07 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 2.120 1.75 +#> 3 NA NA +#> 5 0.110 0.36 +#> 10 0.030 0.18 +#> 15 0.010 0.12 +#> 20 0.008 0.09 +#> 30 0.004 0.06 +#> 40 0.002 0.05 +#> 50 0.002 0.04 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1200 NA +#> 3 6.59 NA 1.190 +#> 5 2.93 0.0100 0.270 +#> 10 0.98 0.0020 0.040 +#> 15 0.51 0.0010 0.010 +#> 20 0.33 0.0005 0.005 +#> 30 0.17 NA NA +#> 40 0.11 NA NA +#> 50 0.08 NA NA #> #> [[6]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 1.64 NA NA -#> 3 NA 22.76 9.21 -#> 5 0.34 14.64 5.18 -#> 10 0.17 8.04 2.38 -#> 15 0.11 3.71 1.20 -#> 20 0.09 1.75 0.68 -#> 30 0.06 0.61 0.31 -#> 40 0.04 0.29 0.17 -#> 50 0.03 0.16 0.11 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 1.64 NA NA NA NA +#> 3 0.56 22.76 9.21 6.41 14.90 +#> 5 0.34 14.64 5.18 2.85 7.79 +#> 10 0.17 8.04 2.38 0.95 3.23 +#> 15 0.11 3.71 1.20 0.50 1.93 +#> 20 0.09 1.75 0.68 0.32 0.83 +#> 30 0.06 0.61 0.31 0.17 0.28 +#> 40 0.04 0.29 0.17 0.11 0.13 +#> 50 0.03 0.16 0.11 0.07 0.07 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 1.980 1.64 +#> 3 NA NA +#> 5 0.100 0.34 +#> 10 0.030 0.17 +#> 15 0.010 0.11 +#> 20 0.008 0.09 +#> 30 0.004 0.06 +#> 40 0.002 0.04 +#> 50 0.001 0.03 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1100 NA +#> 3 6.41 NA 1.070 +#> 5 2.85 0.0100 0.250 +#> 10 0.95 0.0020 0.030 +#> 15 0.50 0.0010 0.010 +#> 20 0.32 0.0004 0.005 +#> 30 0.17 NA NA +#> 40 0.11 NA NA +#> 50 0.07 NA NA #> #> [[7]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 1.61 NA NA -#> 3 NA 22.69 9.10 -#> 5 0.33 14.45 5.11 -#> 10 0.17 7.83 2.33 -#> 15 0.11 3.62 1.20 -#> 20 0.08 1.71 0.67 -#> 30 0.06 0.60 0.30 -#> 40 0.04 0.28 0.17 -#> 50 0.03 0.16 0.11 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 1.61 NA NA NA NA +#> 3 0.55 22.69 9.10 6.33 14.63 +#> 5 0.33 14.45 5.11 2.81 7.60 +#> 10 0.17 7.83 2.33 0.94 3.13 +#> 15 0.11 3.62 1.20 0.49 1.86 +#> 20 0.08 1.71 0.67 0.31 0.81 +#> 30 0.06 0.60 0.30 0.16 0.26 +#> 40 0.04 0.28 0.17 0.10 0.12 +#> 50 0.03 0.16 0.11 0.07 0.06 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 1.930 1.61 +#> 3 NA NA +#> 5 0.100 0.33 +#> 10 0.030 0.17 +#> 15 0.010 0.11 +#> 20 0.008 0.08 +#> 30 0.004 0.06 +#> 40 0.002 0.04 +#> 50 0.001 0.03 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 0.1100 NA +#> 3 6.33 NA 0.960 +#> 5 2.81 0.0100 0.230 +#> 10 0.94 0.0020 0.030 +#> 15 0.49 0.0010 0.010 +#> 20 0.31 0.0004 0.004 +#> 30 0.16 NA NA +#> 40 0.10 NA NA +#> 50 0.07 NA NA #> #> [[8]] #> crop -#> distance Ackerbau Obstbau frueh Obstbau spaet -#> 1 1.52 NA NA -#> 3 NA 22.24 8.66 -#> 5 0.31 14.09 4.92 -#> 10 0.16 7.58 2.29 -#> 15 0.11 3.48 1.14 -#> 20 0.08 1.65 0.65 -#> 30 0.05 0.57 0.29 -#> 40 0.04 0.27 0.16 -#> 50 0.03 0.15 0.11 +#> distance Ackerbau Obstbau frueh Obstbau spaet Weinbau Hopfenbau +#> 1 1.52 NA NA NA NA +#> 3 0.52 22.24 8.66 6.26 13.53 +#> 5 0.31 14.09 4.92 2.78 7.15 +#> 10 0.16 7.58 2.29 0.93 3.01 +#> 15 0.11 3.48 1.14 0.49 1.82 +#> 20 0.08 1.65 0.65 0.31 0.78 +#> 30 0.05 0.57 0.29 0.16 0.25 +#> 40 0.04 0.27 0.16 0.10 0.12 +#> 50 0.03 0.15 0.11 0.07 0.06 +#> crop +#> distance Flaechenkulturen > 900 l/ha Tragbar < 50 cm +#> 1 1.640 1.52 +#> 3 NA NA +#> 5 0.090 0.31 +#> 10 0.020 0.16 +#> 15 0.010 0.11 +#> 20 0.007 0.08 +#> 30 0.003 0.05 +#> 40 0.002 0.04 +#> 50 0.001 0.03 +#> crop +#> distance Tragbar < 50 cm mit Spritzschirm Tragbar > 50 cm Gleisanlagen +#> 1 NA 1e-01 NA +#> 3 6.26 NA 0.890 +#> 5 2.78 1e-02 0.210 +#> 10 0.93 1e-03 0.030 +#> 15 0.49 1e-03 0.010 +#> 20 0.31 4e-04 0.004 +#> 30 0.16 NA NA +#> 40 0.10 NA NA +#> 50 0.07 NA NA #> </div></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> @@ -283,7 +459,7 @@ as its licence is not clear.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html index b4e4516..d80194b 100644 --- a/docs/reference/endpoint.html +++ b/docs/reference/endpoint.html @@ -66,7 +66,7 @@ this function." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -223,7 +223,7 @@ exponent is often called 1/n.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html index 80684b5..f08009b 100644 --- a/docs/reference/geomean.html +++ b/docs/reference/geomean.html @@ -66,7 +66,7 @@ returns 0 if at least one element of the vector is 0." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -162,7 +162,7 @@ returns 0 if at least one element of the vector is 0.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/get_vertex.html b/docs/reference/get_vertex.html index 1e123f1..3aeccf4 100644 --- a/docs/reference/get_vertex.html +++ b/docs/reference/get_vertex.html @@ -64,7 +64,7 @@ https://stackoverflow.com/a/717791" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -144,7 +144,7 @@ https://stackoverflow.com/a/717791</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/index.html b/docs/reference/index.html index dd8d213..ea17397 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -60,7 +60,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -366,7 +366,7 @@ water concentrations</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html index d38e382..b5b4444 100644 --- a/docs/reference/max_twa.html +++ b/docs/reference/max_twa.html @@ -67,7 +67,7 @@ max_twa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -193,7 +193,7 @@ SFO, FOMC and DFOP models and to the parent compound</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/one_box-2.png b/docs/reference/one_box-2.png Binary files differindex eb60bd6..0da7911 100644 --- a/docs/reference/one_box-2.png +++ b/docs/reference/one_box-2.png diff --git a/docs/reference/one_box-3.png b/docs/reference/one_box-3.png Binary files differindex fcb308b..c770252 100644 --- a/docs/reference/one_box-3.png +++ b/docs/reference/one_box-3.png diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html index 799ca6c..42f4541 100644 --- a/docs/reference/one_box.html +++ b/docs/reference/one_box.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -175,8 +175,7 @@ all observed variables.</p></td> <span class='no'>pred_1</span> <span class='kw'><-</span> <span class='fu'>one_box</span>(<span class='no'>fit</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_1</span>)</div><div class='img'><img src='one_box-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='co'># Use a model with more than one observed variable</span> -<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinmod'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinfit'>mkinfit</a></span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>) -<span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'>one_box</span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='st'>"model"</span>) +<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinmod'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinsub'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/mkin/topics/mkinfit'>mkinfit</a></span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'>one_box</span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='st'>"model"</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2</span>)</div><div class='img'><img src='one_box-3.png' alt='' width='700' height='433' /></div></pre> </div> <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> @@ -198,7 +197,7 @@ all observed variables.</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html index 737dbb5..38e61cc 100644 --- a/docs/reference/perc_runoff_exposit.html +++ b/docs/reference/perc_runoff_exposit.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -163,7 +163,7 @@ </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html index 818e2be..56ccca8 100644 --- a/docs/reference/perc_runoff_reduction_exposit.html +++ b/docs/reference/perc_runoff_reduction_exposit.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -162,7 +162,7 @@ from which the values were taken.</p><dl class='dl-horizontal'> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html index a9c94fb..9c62bf7 100644 --- a/docs/reference/pfm_degradation.html +++ b/docs/reference/pfm_degradation.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -174,7 +174,7 @@ is calculated (SFO model).</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/plot.TOXSWA_cwa.html b/docs/reference/plot.TOXSWA_cwa.html index 80a8095..31435e8 100644 --- a/docs/reference/plot.TOXSWA_cwa.html +++ b/docs/reference/plot.TOXSWA_cwa.html @@ -64,7 +64,7 @@ segment of a TOXSWA surface water body." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -194,7 +194,7 @@ to suspended matter?</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/plot.one_box-3.png b/docs/reference/plot.one_box-3.png Binary files differindex 183035a..9767472 100644 --- a/docs/reference/plot.one_box-3.png +++ b/docs/reference/plot.one_box-3.png diff --git a/docs/reference/plot.one_box.html b/docs/reference/plot.one_box.html index bdbece5..5bc6847 100644 --- a/docs/reference/plot.one_box.html +++ b/docs/reference/plot.one_box.html @@ -63,7 +63,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -163,8 +163,7 @@ be shown if max_twa is not NULL.</p></td> <pre class="examples"><div class='input'><span class='no'>dfop_pred</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='st'>"DFOP"</span>, <span class='kw'>parms</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>k1</span> <span class='kw'>=</span> <span class='fl'>0.2</span>, <span class='kw'>k2</span> <span class='kw'>=</span> <span class='fl'>0.02</span>, <span class='kw'>g</span> <span class='kw'>=</span> <span class='fl'>0.7</span>)) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>dfop_pred</span>)</div><div class='img'><img src='plot.one_box-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='fu'><a href='sawtooth.html'>sawtooth</a></span>(<span class='no'>dfop_pred</span>, <span class='fl'>3</span>, <span class='fl'>7</span>), <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>)</div><div class='img'><img src='plot.one_box-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='co'># Use a fitted mkinfit model</span> -<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>) -<span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>) +<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>) <span class='no'>pred_2_saw</span> <span class='kw'><-</span> <span class='fu'><a href='sawtooth.html'>sawtooth</a></span>(<span class='no'>pred_2</span>, <span class='fl'>2</span>, <span class='fl'>7</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2_saw</span>, <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>, <span class='kw'>max_twa_var</span> <span class='kw'>=</span> <span class='st'>"m1"</span>)</div><div class='img'><img src='plot.one_box-3.png' alt='' width='700' height='433' /></div></pre> </div> @@ -187,7 +186,7 @@ be shown if max_twa is not NULL.</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html index 6a0ee74..881aa87 100644 --- a/docs/reference/read.TOXSWA_cwa.html +++ b/docs/reference/read.TOXSWA_cwa.html @@ -68,7 +68,7 @@ renamed to ConLiqWatLay in the out file." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -202,7 +202,7 @@ generating event statistics.</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/sawtooth-2.png b/docs/reference/sawtooth-2.png Binary files differindex 183035a..9767472 100644 --- a/docs/reference/sawtooth-2.png +++ b/docs/reference/sawtooth-2.png diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html index 638d290..39a2e99 100644 --- a/docs/reference/sawtooth.html +++ b/docs/reference/sawtooth.html @@ -65,7 +65,7 @@ times, with an interval i." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -145,8 +145,7 @@ the corresponding amounts applied in the second column.</p></td> <pre class="examples"><div class='input'><span class='no'>applications</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span>(<span class='kw'>time</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/seq'>seq</a></span>(<span class='fl'>0</span>, <span class='fl'>14</span>, <span class='kw'>by</span> <span class='kw'>=</span> <span class='fl'>7</span>), <span class='kw'>amount</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='fl'>1</span>, <span class='fl'>2</span>, <span class='fl'>3</span>)) <span class='no'>pred</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='fl'>10</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='fu'>sawtooth</span>(<span class='no'>pred</span>, <span class='kw'>applications</span> <span class='kw'>=</span> <span class='no'>applications</span>))</div><div class='img'><img src='sawtooth-1.png' alt='' width='700' height='433' /></div><div class='input'> -<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>) -<span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>) +<span class='no'>m_2</span> <span class='kw'><-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#> <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>fit_2</span> <span class='kw'><-</span> <span class='fu'>mkinfit</span>(<span class='no'>m_2</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='no'>pred_2</span> <span class='kw'><-</span> <span class='fu'><a href='one_box.html'>one_box</a></span>(<span class='no'>fit_2</span>, <span class='kw'>ini</span> <span class='kw'>=</span> <span class='fl'>1</span>) <span class='no'>pred_2_saw</span> <span class='kw'><-</span> <span class='fu'>sawtooth</span>(<span class='no'>pred_2</span>, <span class='fl'>2</span>, <span class='fl'>7</span>) <span class='fu'><a href='https://www.rdocumentation.org/packages/graphics/topics/plot'>plot</a></span>(<span class='no'>pred_2_saw</span>, <span class='kw'>max_twa</span> <span class='kw'>=</span> <span class='fl'>21</span>, <span class='kw'>max_twa_var</span> <span class='kw'>=</span> <span class='st'>"m1"</span>)</div><div class='img'><img src='sawtooth-2.png' alt='' width='700' height='433' /></div><div class='input'> <span class='fu'><a href='max_twa.html'>max_twa</a></span>(<span class='no'>pred_2_saw</span>)</div><div class='output co'>#> $max @@ -179,7 +178,7 @@ the corresponding amounts applied in the second column.</p></td> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html index 6051cc2..3a2f122 100644 --- a/docs/reference/soil_scenario_data_EFSA_2015.html +++ b/docs/reference/soil_scenario_data_EFSA_2015.html @@ -65,7 +65,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -185,7 +185,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html index 082fb7b..acbfceb 100644 --- a/docs/reference/soil_scenario_data_EFSA_2017.html +++ b/docs/reference/soil_scenario_data_EFSA_2017.html @@ -65,7 +65,7 @@ scenario and model adjustment factors from p. 16 and p. 18 are included." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -166,7 +166,7 @@ scenario and model adjustment factors from p. 16 and p. 18 are included.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> diff --git a/docs/reference/twa.html b/docs/reference/twa.html index 69efa7f..9fdcc5f 100644 --- a/docs/reference/twa.html +++ b/docs/reference/twa.html @@ -65,7 +65,7 @@ is after one window has passed." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.4</span> </span> </div> @@ -172,7 +172,7 @@ is after one window has passed.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p> + <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.9000.</p> </div> </footer> </div> |
