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authorJohannes Ranke <jranke@uni-bremen.de>2016-09-27 23:00:48 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2016-09-27 23:00:48 +0200
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+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+<title>read.TOXSWA_cwa. pfm 0.3-7</title>
+<meta name="viewport" content="width=device-width, initial-scale=1.0">
+<meta name="author" content="
+Johannes Ranke
+">
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+ </ul>
+ </div>
+ </div>
+ </div>
+</div>
+
+ <div class="container">
+ <header>
+
+ </header>
+
+ <h1>Read TOXSWA surface water concentrations</h1>
+
+<div class="row">
+ <div class="span8">
+ <h2>Usage</h2>
+ <pre><div>read.TOXSWA_cwa(filename, basedir&nbsp;=&nbsp;".", zipfile&nbsp;=&nbsp;NULL, segment&nbsp;=&nbsp;"last", substance&nbsp;=&nbsp;"parent", total&nbsp;=&nbsp;FALSE, windows&nbsp;=&nbsp;NULL, thresholds&nbsp;=&nbsp;NULL)</div></pre>
+
+ <h2>Arguments</h2>
+ <dl>
+ <dt>filename</dt>
+ <dd>The filename of the cwa file (TOXSWA 2.x.y or similar) or the
+out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).</dd>
+ <dt>basedir</dt>
+ <dd>The path to the directory where the cwa file resides.</dd>
+ <dt>zipfile</dt>
+ <dd>Optional path to a zip file containing the cwa file.</dd>
+ <dt>segment</dt>
+ <dd>The segment for which the data should be read. Either "last", or
+the segment number.</dd>
+ <dt>substance</dt>
+ <dd>For TOXSWA 4 .out files, the default value "parent" leads
+to reading concentrations of the parent compound. Alternatively, the substance
+of interested can be selected by its code name.</dd>
+ <dt>total</dt>
+ <dd>Set this to TRUE in order to read total concentrations as well. This is
+only necessary for .out files as generated by TOXSWA 4.4.2 or similar, not for .cwa
+files. For .cwa files, the total concentration is always read as well.</dd>
+ <dt>windows</dt>
+ <dd>Numeric vector of width of moving windows in days, for calculating
+maximum time weighted average concentrations and areas under the curve.</dd>
+ <dt>thresholds</dt>
+ <dd>Numeric vector of threshold concentrations in µg/L for
+generating event statistics.</dd>
+ </dl>
+
+ <div class="Value">
+ <h2>Value</h2>
+
+ <p><dl>
+An instance of an R6 object of class
+<code><a href='TOXSWA_cwa.html'>TOXSWA_cwa</a></code>.
+</dl></p>
+
+ </div>
+
+ <div class="Description">
+ <h2>Description</h2>
+
+ <p>Read TOXSWA hourly concentrations of a chemical substance in a specific
+segment of a TOXSWA surface water body. Per default, the data for the last
+segment are imported. As TOXSWA 4 reports the values at the end of the hour
+(ConLiqWatLayCur) in its summary file, we use this value as well instead
+of the hourly averages (ConLiqWatLay).</p>
+
+ </div>
+
+ <h2 id="examples">Examples</h2>
+ <pre class="examples"><div class='input'>H_sw_D4_pond &lt;- read.TOXSWA_cwa(&quot;00001p_pa.cwa&quot;,
+ basedir = &quot;SwashProjects/project_H_sw/TOXSWA&quot;,
+ zipfile = system.file(&quot;testdata/SwashProjects.zip&quot;,
+ package = &quot;pfm&quot;))
+</div></pre>
+ </div>
+ <div class="span4">
+ <!-- <ul>
+ <li>read.TOXSWA_cwa</li>
+ </ul>
+ <ul>
+
+ </ul> -->
+
+
+ <h2>Author</h2>
+
+Johannes Ranke
+
+
+ </div>
+</div>
+
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