Set up FOCUS PELMO runs and run them in parallel

- This works on Linux using wine
- PELMO runs (including pelmo.inp files) are correctly generated
- The PLM files for FOCUS Pesticide_D in the test data archive are
  correctly reproduced
- The data files (including FOCUS groundwater scenario data) are now
  created and documented in R files

1 files changed, 35 insertions, 0 deletions

diff --git a/man/PELMO_runs.Rd b/man/PELMO_runs.Rd
new file mode 100644
index 0000000..71fe6ef
--- /dev/null
+++ b/man/PELMO_runs.Rd
@@ -0,0 +1,35 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/PELMO_runs.R
+\name{PELMO_runs}
+\alias{PELMO_runs}
+\title{Set up runs for FOCUS PELMO}
+\usage{
+PELMO_runs(runs, psm_dir = ".", version = "5.5.3", PELMO_base = "auto",
+  execute = TRUE, cores = getOption("mc.cores", 2L), evaluate = TRUE,
+  overwrite = FALSE)
+}
+\arguments{
+\item{runs}{A list of lists. Each inner lists has an element named 'psm'
+that holds the psm string, and elements named using three letter crop acronyms,
+as used in \code{\link{FOCUS_PELMO_crops}},
+that hold character vectors of three letter scenario acronyms
+as used in \code{\link{FOCUS_GW_scenarios_2012}}.}
+
+\item{psm_dir}{The directory where the psm files are located}
+
+\item{version}{The FOCUS PELMO version}
+
+\item{PELMO_base}{Where the FOCUS PELMO installation is located}
+
+\item{execute}{Should PELMO be executed directly?}
+
+\item{cores}{The number of cores to execute PELMO runs in parallel}
+
+\item{evaluate}{Should the results be returned?}
+
+\item{overwrite}{Should an existing run directories be overwritten}
+}
+\description{
+Per default, the runs are also executed with FOCUS PELMO, and the results are processed
+and returned.
+}