diff options
Diffstat (limited to 'docs')
43 files changed, 514 insertions, 68 deletions
diff --git a/docs/authors.html b/docs/authors.html index 0870c21..e128b4d 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -58,7 +58,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/index.html b/docs/index.html index 1558e8a..70a1fed 100644 --- a/docs/index.html +++ b/docs/index.html @@ -31,7 +31,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -84,7 +84,11 @@ this program. If not, see <span class="op"><</span>http<span class="op">:</sp <div id="installation" class="section level2"> <h2 class="hasAnchor"> <a href="#installation" class="anchor"></a>Installation</h2> -<p>You can install the package from <a href="http://github.com/jranke/pfm">github</a>, e.g. using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes, to make installation as fast and painless as possible.</p> +<p>The easiest way to install the package is probably to use <a href="https://cran.r-project.org/package=drat">drat</a>:</p> +<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"drat"</span>) +drat<span class="op">::</span><span class="kw"><a href="http://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>) +<span class="kw">install.packages</span>(<span class="st">"pfm"</span>)</code></pre></div> +<p>Alternatively you can install the package using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes.</p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(devtools) <span class="kw"><a href="http://www.rdocumentation.org/packages/devtools/topics/install_github">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div> </div> diff --git a/docs/reference/FOCUS_GW_scenarios_2012.html b/docs/reference/FOCUS_GW_scenarios_2012.html index 3402035..af6d243 100644 --- a/docs/reference/FOCUS_GW_scenarios_2012.html +++ b/docs/reference/FOCUS_GW_scenarios_2012.html @@ -62,7 +62,7 @@ soil definitions are from page 46ff. from FOCUS (2012)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_crop_sze_names.html b/docs/reference/FOCUS_PELMO_crop_sze_names.html index 9297f2a..4eed679 100644 --- a/docs/reference/FOCUS_PELMO_crop_sze_names.html +++ b/docs/reference/FOCUS_PELMO_crop_sze_names.html @@ -64,7 +64,7 @@ files used for Beans (field) and Beans (vegetable) are the same." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_crops.html b/docs/reference/FOCUS_PELMO_crops.html index 2393e41..e4928cd 100644 --- a/docs/reference/FOCUS_PELMO_crops.html +++ b/docs/reference/FOCUS_PELMO_crops.html @@ -65,7 +65,7 @@ in the three letter code, i.e. 'Peas (animals)' has the code ape." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_PELMO_location_codes.html b/docs/reference/FOCUS_PELMO_location_codes.html index d601243..8177747 100644 --- a/docs/reference/FOCUS_PELMO_location_codes.html +++ b/docs/reference/FOCUS_PELMO_location_codes.html @@ -62,7 +62,7 @@ indexed by three letter acronyms." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOCUS_Step_12_scenarios.html b/docs/reference/FOCUS_Step_12_scenarios.html index 294846d..b9f2e0d 100644 --- a/docs/reference/FOCUS_Step_12_scenarios.html +++ b/docs/reference/FOCUS_Step_12_scenarios.html @@ -62,7 +62,7 @@ The text file is not included in the package as its licence is not clear." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/FOMC_actual_twa.html b/docs/reference/FOMC_actual_twa.html new file mode 100644 index 0000000..685edc3 --- /dev/null +++ b/docs/reference/FOMC_actual_twa.html @@ -0,0 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moving window time average concentrations for FOMC kinetics" /> +<meta name="twitter:card" content="summary" /> + + + +<!-- mathjax --> +<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> + +<!--[if lt IE 9]> +<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> +<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> +<![endif]--> + + + </head> + + <body> + <div class="container template-reference-topic"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <span class="navbar-brand"> + <a class="navbar-link" href="../index.html">pfm</a> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> + </span> + </div> + + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> +</li> +<li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + <li> + <a href="https://github.com/jranke/pfm"> + <span class="fa fa-github fa-lg"></span> + + </a> +</li> + </ul> + + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + +<div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Actual and maximum moving window time average concentrations for FOMC kinetics</h1> + <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/FOMC_actual_twa.R'><code>R/FOMC_actual_twa.R</code></a></small> + <div class="hidden name"><code>FOMC_actual_twa.Rd</code></div> + </div> + + <div class="ref-description"> + + <p>Actual and maximum moving window time average concentrations for FOMC kinetics</p> + + </div> + + <pre class="usage"><span class='fu'>FOMC_actual_twa</span>(<span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>1.0001</span>, <span class='kw'>beta</span> <span class='kw'>=</span> <span class='fl'>10</span>, <span class='kw'>times</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>1</span>, <span class='fl'>2</span>, <span class='fl'>4</span>, <span class='fl'>7</span>, <span class='fl'>14</span>, + <span class='fl'>21</span>, <span class='fl'>28</span>, <span class='fl'>42</span>, <span class='fl'>50</span>, <span class='fl'>100</span>))</pre> + + <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> + <table class="ref-arguments"> + <colgroup><col class="name" /><col class="desc" /></colgroup> + <tr> + <th>alpha</th> + <td><p>Parameter of the FOMC model</p></td> + </tr> + <tr> + <th>beta</th> + <td><p>Parameter of the FOMC model</p></td> + </tr> + <tr> + <th>times</th> + <td><p>The output times, and window sizes for time weighted average concentrations</p></td> + </tr> + </table> + + <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> + + <p>FOCUS (2014) Generic Guidance for Estimating Persistence and Degradation + Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, + 18 December 2014, p. 251</p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'><span class='fu'>FOMC_actual_twa</span>(<span class='kw'>alpha</span> <span class='kw'>=</span> <span class='fl'>1.0001</span>, <span class='kw'>beta</span> <span class='kw'>=</span> <span class='fl'>10</span>)</div><div class='output co'>#> actual twa +#> 0 1.00000000 NaN +#> 1 0.90908224 0.9530973 +#> 2 0.83331814 0.9115995 +#> 4 0.71426168 0.8411664 +#> 7 0.58820408 0.7580202 +#> 14 0.41663019 0.6253074 +#> 21 0.32254415 0.5387324 +#> 28 0.26312277 0.4767543 +#> 42 0.19227599 0.3925054 +#> 50 0.16663681 0.3583198 +#> 100 0.09088729 0.2397608</div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + <li><a href="#arguments">Arguments</a></li> + + <li><a href="#source">Source</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + <h2>Author</h2> + +Johannes Ranke + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + + + </body> +</html> + diff --git a/docs/reference/GUS.html b/docs/reference/GUS.html index 3fa93c9..65763bc 100644 --- a/docs/reference/GUS.html +++ b/docs/reference/GUS.html @@ -63,7 +63,7 @@ $$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_soil.html b/docs/reference/PEC_soil.html index 65c8519..8903470 100644 --- a/docs/reference/PEC_soil.html +++ b/docs/reference/PEC_soil.html @@ -33,9 +33,10 @@ <meta property="og:title" content="Calculate predicted environmental concentrations in soil — PEC_soil" /> <meta property="og:description" content="This is a basic calculation of a contaminant concentration in bulk soil -based on complete, instantaneous mixing. If an interval is given, an +based on complete, instantaneous mixing. If an interval is given, an attempt is made at calculating a long term maximum concentration using -the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> +the concepts layed out in the PPR panel opinion (EFSA PPR panel 2012 +and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017)." /> <meta name="twitter:card" content="summary" /> @@ -64,7 +65,7 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -108,17 +109,20 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012)." /> <div class="ref-description"> <p>This is a basic calculation of a contaminant concentration in bulk soil -based on complete, instantaneous mixing. If an interval is given, an +based on complete, instantaneous mixing. If an interval is given, an attempt is made at calculating a long term maximum concentration using -the concepts layed out for example in the PPR panel opinion (EFSA 2012).</p> +the concepts layed out in the PPR panel opinion (EFSA PPR panel 2012 +and in the EFSA guidance on PEC soil calculations (EFSA, 2015, 2017).</p> </div> <pre class="usage"><span class='fu'>PEC_soil</span>(<span class='no'>rate</span>, <span class='kw'>rate_units</span> <span class='kw'>=</span> <span class='st'>"g/ha"</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>mixing_depth</span> <span class='kw'>=</span> <span class='fl'>5</span>, <span class='kw'>PEC_units</span> <span class='kw'>=</span> <span class='st'>"mg/kg"</span>, <span class='kw'>PEC_pw_units</span> <span class='kw'>=</span> <span class='st'>"mg/L"</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>NA</span>, - <span class='kw'>n_periods</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>tillage_depth</span> <span class='kw'>=</span> <span class='fl'>20</span>, <span class='kw'>chent</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>NA</span>, + <span class='kw'>n_periods</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>tillage_depth</span> <span class='kw'>=</span> <span class='fl'>20</span>, <span class='kw'>leaching_depth</span> <span class='kw'>=</span> <span class='no'>tillage_depth</span>, + <span class='kw'>crop</span> <span class='kw'>=</span> <span class='st'>"annual"</span>, <span class='kw'>cultivation</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>chent</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='no'>Koc</span>/<span class='fl'>1.724</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"default"</span>, - <span class='st'>"EFSA_2015"</span>), <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre> + <span class='st'>"EFSA_2017"</span>, <span class='st'>"EFSA_2015"</span>), <span class='kw'>leaching</span> <span class='kw'>=</span> <span class='no'>scenarios</span> <span class='kw'>==</span> <span class='st'>"EFSA_2017"</span>, + <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre> <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> <table class="ref-arguments"> @@ -150,7 +154,7 @@ the concepts layed out for example in the PPR panel opinion (EFSA 2012).</p> <tr> <th>interval</th> <td><p>Period of the deeper mixing, defaults to 365, which is a year if -rate units are in days</p></td> +degradation rate units are in days</p></td> </tr> <tr> <th>n_periods</th> @@ -161,8 +165,27 @@ rate units are in days</p></td> <td><p>Periodic (see interval) deeper mixing in cm</p></td> </tr> <tr> + <th>leaching_depth</th> + <td><p>EFSA (2017) uses the mixing depth (ecotoxicological +evaluation depth) to calculate leaching for annual crops where tillage +takes place. By default, losses from the layer down to the tillage +depth are taken into account in this implementation.</p></td> + </tr> + <tr> + <th>crop</th> + <td><p>Ignored for scenarios other than EFSA_2017. Only annual crops +are supported when these scenarios are used. Only crops with a single cropping +cycle per year are currently supported.</p></td> + </tr> + <tr> + <th>cultivation</th> + <td><p>Does mechanical cultivation in the sense of EFSA (2017) +take place, i.e. twice a year to a depth of 5 cm? Ignored for scenarios +other than EFSA_2017</p></td> + </tr> + <tr> <th>chent</th> - <td><p>An optional chent object holding substance specific information. Can + <td><p>An optional chent object holding substance specific information. Can also be a name for the substance as a character string</p></td> </tr> <tr> @@ -195,6 +218,11 @@ and corrected using an Arrhenius activation energy of 65.4 kJ/mol. Also model and scenario adjustment factors from the EFSA guidance are used.</p></td> </tr> <tr> + <th>leaching</th> + <td><p>Should leaching be taken into account? The default is FALSE, +except when the EFSA_2017 scenarios are used.</p></td> + </tr> + <tr> <th>porewater</th> <td><p>Should equilibrium porewater concentrations be estimated based on Kom and the organic carbon fraction of the soil instead of total @@ -212,14 +240,24 @@ p. 13).</p></td> <p>This assumes that the complete load to soil during the time specified by 'interval' (typically 365 days) is dosed at once. As in the PPR panel -opinion cited below (PPR panel 2012), only temperature correction using the +opinion cited below (EFSA PPR panel 2012), only temperature correction using the Arrhenius equation is performed.</p> <p>Total soil and porewater PEC values for the scenarios as defined in the EFSA -guidance (2015, p. 13) can easily be calculated.</p> +guidance (2017, p. 14/15) can easily be calculated.</p> <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2> - <p>If temperature information is available in the selected scenarios, as + <p>While time weighted average (TWA) concentrations given in the examples +from the EFSA guidance from 2015 (p. 80) are be reproduced, this is not +true for the TWA concentrations given for the same example in the EFSA guidance +from 2017 (p. 92).</p> +<p>According to the EFSA guidance (EFSA, 2017, p. 43), leaching should be + taken into account for the EFSA 2017 scenarios, using the evaluation depth + (here mixing depth) as the depth of the layer from which leaching takes + place. However, as the amount leaching below the evaluation depth + (often 5 cm) will partly be mixed back during tillage, the default in this function + is to use the tillage depth for the calculation of the leaching rate.</p> +<p>If temperature information is available in the selected scenarios, as e.g. in the EFSA scenarios, the DT50 for groundwater modelling (destination 'PECgw') is taken from the chent object, otherwise the DT50 with destination 'PECsoil'.</p> @@ -231,6 +269,11 @@ guidance (2015, p. 13) can easily be calculated.</p> selection and scenario parameterisation for predicting environmental concentrations of plant protection products in soil. <em>EFSA Journal</em> <b>10</b>(2) 2562, doi:10.2903/j.efsa.2012.2562</p> +<p>EFSA (European Food Safety Authority) 2017) EFSA guidance document for + predicting environmental concentrations of active substances of plant + protection products and transformation products of these active substances + in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 + doi:10.2903/j.efsa.2017.4982</p> <p>EFSA (European Food Safety Authority) (2015) EFSA guidance document for predicting environmental concentrations of active substances of plant protection products and transformation products of these active substances @@ -242,6 +285,18 @@ guidance (2015, p. 13) can easily be calculated.</p> <pre class="examples"><div class='input'><span class='fu'>PEC_soil</span>(<span class='fl'>100</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0.25</span>)</div><div class='output co'>#> scenario #> t_avg default #> 0 0.1</div><div class='input'> +<span class='co'># This is example 1 starting at p. 92 of the EFSA guidance (2017)</span> +<span class='co'># Note that TWA concentrations differ from the ones given in the guidance</span> +<span class='co'># for an unknown reason (the values from EFSA (2015) can be reproduced).</span> +<span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), + <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2017"</span>)</div><div class='output co'>#> scenario +#> t_avg CTN CTC CTS +#> 0 19.76834 13.8619 10.53795 +#> 21 19.59345 13.7169 10.39882</div><div class='input'><span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_av</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), + <span class='kw'>Kom</span> <span class='kw'>=</span> <span class='fl'>1000</span>, <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2017"</span>, <span class='kw'>porewater</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#> scenario +#> t_avg CLN CLC CLS +#> 0 0.5541984 0.6779249 0.9816693 +#> 21 0.5484576 0.6693125 0.9609119</div><div class='input'> <span class='co'># This is example 1 starting at p. 79 of the EFSA guidance (2015)</span> <span class='fu'>PEC_soil</span>(<span class='fl'>1000</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>250</span>, <span class='kw'>t_avg</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>21</span>), <span class='kw'>scenarios</span> <span class='kw'>=</span> <span class='st'>"EFSA_2015"</span>)</div><div class='output co'>#> scenario diff --git a/docs/reference/PEC_sw_drainage_UK.html b/docs/reference/PEC_sw_drainage_UK.html index 6eb042e..e183ae2 100644 --- a/docs/reference/PEC_sw_drainage_UK.html +++ b/docs/reference/PEC_sw_drainage_UK.html @@ -62,7 +62,7 @@ published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_drift.html b/docs/reference/PEC_sw_drift.html index fa9a968..b5608db 100644 --- a/docs/reference/PEC_sw_drift.html +++ b/docs/reference/PEC_sw_drift.html @@ -63,7 +63,7 @@ with input via spray drift." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html index 37ba843..9fab616 100644 --- a/docs/reference/PEC_sw_exposit_runoff.html +++ b/docs/reference/PEC_sw_exposit_runoff.html @@ -62,7 +62,7 @@ in the worksheet "Konzept Runoff". Calculation of sediment PEC values </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_focus.html b/docs/reference/PEC_sw_focus.html index 5e66d25..88f5b43 100644 --- a/docs/reference/PEC_sw_focus.html +++ b/docs/reference/PEC_sw_focus.html @@ -67,7 +67,7 @@ to be used with the FOCUS calculator." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PEC_sw_sed.html b/docs/reference/PEC_sw_sed.html index 5dc6cea..01ccf29 100644 --- a/docs/reference/PEC_sw_sed.html +++ b/docs/reference/PEC_sw_sed.html @@ -64,7 +64,7 @@ PEC calculator" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PELMO_path.html b/docs/reference/PELMO_path.html index 12c9a0d..b390917 100644 --- a/docs/reference/PELMO_path.html +++ b/docs/reference/PELMO_path.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html index dc068c3..12a4244 100644 --- a/docs/reference/PELMO_runs.html +++ b/docs/reference/PELMO_runs.html @@ -67,7 +67,7 @@ and run using wine." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -229,7 +229,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p> #> #> </div><div class='input'><span class='co'># We get exactly the same PECgw values (on Linux, calling PELMO using Wine).</span> <span class='fu'>print</span>(<span class='no'>time_1</span>)</div><div class='output co'>#> User System verstrichen -#> 0.388 0.088 30.344 </div><div class='input'><span class='kw'>if</span>(!<span class='fu'>inherits</span>(<span class='fu'>try</span>(<span class='no'>cpuinfo</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='st'>"/proc/cpuinfo"</span>)), <span class='st'>"try-error"</span>)) { +#> 0.383 0.129 30.547 </div><div class='input'><span class='kw'>if</span>(!<span class='fu'>inherits</span>(<span class='fu'>try</span>(<span class='no'>cpuinfo</span> <span class='kw'><-</span> <span class='fu'>readLines</span>(<span class='st'>"/proc/cpuinfo"</span>)), <span class='st'>"try-error"</span>)) { <span class='fu'>cat</span>(<span class='fu'>gsub</span>(<span class='st'>"model name\t: "</span>, <span class='st'>"CPU model: "</span>, <span class='no'>cpuinfo</span>[<span class='fu'>grep</span>(<span class='st'>"model name"</span>, <span class='no'>cpuinfo</span>)[<span class='fl'>1</span>]])) }</div><div class='output co'>#> CPU model: AMD Ryzen 7 1700 Eight-Core Processor</div><div class='input'> <span class='co'># Demonstrate some results with metabolites.</span> diff --git a/docs/reference/SFO_actual_twa.html b/docs/reference/SFO_actual_twa.html index e6fc526..b7b65f5 100644 --- a/docs/reference/SFO_actual_twa.html +++ b/docs/reference/SFO_actual_twa.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -127,7 +127,7 @@ <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> <p>FOCUS (2014) Generic Guidance for Estimating Persistence and Degradation - Kinetics from Environmental Fate Studies on Pesticides in EU Registratin, Version 1.1, + Kinetics from Environmental Fate Studies on Pesticides in EU Registration, Version 1.1, 18 December 2014, p. 251</p> diff --git a/docs/reference/SSLRC_mobility_classification.html b/docs/reference/SSLRC_mobility_classification.html index 4e673bf..06be24e 100644 --- a/docs/reference/SSLRC_mobility_classification.html +++ b/docs/reference/SSLRC_mobility_classification.html @@ -62,7 +62,7 @@ checked against the spreadsheet published on the CRC website" /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/TOXSWA_cwa.html b/docs/reference/TOXSWA_cwa.html index a078e31..a1b6bfe 100644 --- a/docs/reference/TOXSWA_cwa.html +++ b/docs/reference/TOXSWA_cwa.html @@ -6,7 +6,7 @@ <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> -<title>R6 class for holding TOXSWA cwa concentration data and associated statistics — TOXSWA_cwa • pfm</title> +<title>R6 class for holding TOXSWA water concentration data and associated statistics — TOXSWA_cwa • pfm</title> <!-- jquery --> <script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> @@ -30,9 +30,9 @@ -<meta property="og:title" content="R6 class for holding TOXSWA cwa concentration data and associated statistics — TOXSWA_cwa" /> +<meta property="og:title" content="R6 class for holding TOXSWA water concentration data and associated statistics — TOXSWA_cwa" /> -<meta property="og:description" content="An R6 class for holding TOXSWA cwa concentration data and some associated statistics. +<meta property="og:description" content="An R6 class for holding TOXSWA water concentration (cwa) data and some associated statistics. Usually, an instance of this class will be generated by read.TOXSWA_cwa." /> <meta name="twitter:card" content="summary" /> @@ -62,7 +62,7 @@ Usually, an instance of this class will be generated by read.TOXSWA_cwa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -98,14 +98,14 @@ Usually, an instance of this class will be generated by read.TOXSWA_cwa." /> <div class="row"> <div class="col-md-9 contents"> <div class="page-header"> - <h1>R6 class for holding TOXSWA cwa concentration data and associated statistics</h1> + <h1>R6 class for holding TOXSWA water concentration data and associated statistics</h1> <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/TOXSWA_cwa.R'><code>R/TOXSWA_cwa.R</code></a></small> <div class="hidden name"><code>TOXSWA_cwa.Rd</code></div> </div> <div class="ref-description"> - <p>An R6 class for holding TOXSWA cwa concentration data and some associated statistics. + <p>An R6 class for holding TOXSWA water concentration (cwa) data and some associated statistics. Usually, an instance of this class will be generated by <code><a href='read.TOXSWA_cwa.html'>read.TOXSWA_cwa</a></code>.</p> </div> diff --git a/docs/reference/chent_focus_sw.html b/docs/reference/chent_focus_sw.html index 501f002..39b3c9e 100644 --- a/docs/reference/chent_focus_sw.html +++ b/docs/reference/chent_focus_sw.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/create_run_list.html b/docs/reference/create_run_list.html index 02d2d0c..c52719d 100644 --- a/docs/reference/create_run_list.html +++ b/docs/reference/create_run_list.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/drift_data_JKI.html b/docs/reference/drift_data_JKI.html index 9cee8fe..c3f1f4d 100644 --- a/docs/reference/drift_data_JKI.html +++ b/docs/reference/drift_data_JKI.html @@ -64,7 +64,7 @@ published by the German Julius-Kühn Institute (JKI)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/endpoint.html b/docs/reference/endpoint.html index 2a36788..819d8bc 100644 --- a/docs/reference/endpoint.html +++ b/docs/reference/endpoint.html @@ -64,7 +64,7 @@ this function." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/focus_80th.html b/docs/reference/focus_80th.html index c15c73a..0604fa7 100644 --- a/docs/reference/focus_80th.html +++ b/docs/reference/focus_80th.html @@ -64,7 +64,7 @@ values obtained by PELMO." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/geomean.html b/docs/reference/geomean.html index b8c2415..dfcd15e 100644 --- a/docs/reference/geomean.html +++ b/docs/reference/geomean.html @@ -64,7 +64,7 @@ returns 0 if at least one element of the vector is 0." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/get_flux.html b/docs/reference/get_flux.html index 7e331ec..518b09c 100644 --- a/docs/reference/get_flux.html +++ b/docs/reference/get_flux.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/get_interval.html b/docs/reference/get_interval.html index 2d1dc02..4b73ca2 100644 --- a/docs/reference/get_interval.html +++ b/docs/reference/get_interval.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/index.html b/docs/reference/index.html index 395b446..12abbd4 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -58,7 +58,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -160,6 +160,12 @@ <p><code><a href="SFO_actual_twa.html">SFO_actual_twa()</a></code> </p> </td> <td><p>Actual and maximum moving window time average concentrations for SFO kinetics</p></td> + </tr><tr> + + <td> + <p><code><a href="FOMC_actual_twa.html">FOMC_actual_twa()</a></code> </p> + </td> + <td><p>Actual and maximum moving window time average concentrations for FOMC kinetics</p></td> </tr> </tbody><tbody> <tr> @@ -180,6 +186,12 @@ <p><code><a href="soil_scenario_data_EFSA_2015.html">soil_scenario_data_EFSA_2015</a></code> </p> </td> <td><p>Properties of the predefined scenarios from the EFSA guidance from 2015</p></td> + </tr><tr> + + <td> + <p><code><a href="soil_scenario_data_EFSA_2017.html">soil_scenario_data_EFSA_2017</a></code> </p> + </td> + <td><p>Properties of the predefined scenarios from the EFSA guidance from 2017</p></td> </tr> </tbody><tbody> <tr> @@ -311,7 +323,7 @@ water concentrations</p></td> <td> <p><code><a href="TOXSWA_cwa.html">TOXSWA_cwa</a></code> </p> </td> - <td><p>R6 class for holding TOXSWA cwa concentration data and associated statistics</p></td> + <td><p>R6 class for holding TOXSWA water concentration data and associated statistics</p></td> </tr><tr> <td> diff --git a/docs/reference/max_twa.html b/docs/reference/max_twa.html index 0875c46..c603fb4 100644 --- a/docs/reference/max_twa.html +++ b/docs/reference/max_twa.html @@ -65,7 +65,7 @@ max_twa." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/one_box.html b/docs/reference/one_box.html index 1e793d0..f3a6324 100644 --- a/docs/reference/one_box.html +++ b/docs/reference/one_box.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html index e24e0ad..2c7dd2a 100644 --- a/docs/reference/perc_runoff_exposit.html +++ b/docs/reference/perc_runoff_exposit.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -113,6 +113,7 @@ <p>A data frame with percentage values for the dissolved fraction and the fraction bound to eroding particles, with Koc classes used as row names</p><dl class='dl-horizontal'> + <dt>Koc_lower_bound</dt><dd><p>The lower bound of the Koc class</p></dd> <dt>dissolved</dt><dd><p>The percentage of the applied substance transferred to an adjacent water body in the dissolved phase</p></dd> <dt>bound</dt><dd><p>The percentage of the applied substance transferred to an diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html index 69acbac..9a8f10a 100644 --- a/docs/reference/perc_runoff_reduction_exposit.html +++ b/docs/reference/perc_runoff_reduction_exposit.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/pesticide.txt b/docs/reference/pesticide.txt index 42be741..1f9181a 100644 --- a/docs/reference/pesticide.txt +++ b/docs/reference/pesticide.txt @@ -31,3 +31,13 @@ Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Du M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 +Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA Dummy 1 cereals, spring n NA Dummy 1 cereals, winter s of Dummy 1 citrus n mm Dummy 1 cotton s js Dummy 1 field beans n NA Dummy 1 grass / alfalfa s of Dummy 1 hops n mm Dummy 1 legumes s js Dummy 1 maize n NA Dummy 1 oil seed rape, spring s of Dummy 1 oil seed rape, winter n mm Dummy 1 olives s js Dummy 1 pome / stone fruit, early applns n NA Dummy 1 pome / stone fruit, late applns s of Dummy 1 potatoes n mm Dummy 1 soybeans s js Dummy 1 sugar beets n NA Dummy 1 sunflowers s of Dummy 1 tobacco n mm Dummy 1 vegetables, bulb s js Dummy 1 vegetables, fruiting n NA Dummy 1 vegetables, leafy s of Dummy 1 vegetables, root n mm Dummy 1 vines, early applns s js Dummy 1 vines, late applns n NA Dummy 1 appln, aerial s of Dummy 1 appln, hand (crop < 50 cm) n mm Dummy 1 appln, hand (crop > 50 cm) s js Dummy 1 no drift (incorp or seed trtmt) n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 11.00 12.00 13.00 14.00 15.00 16.00 17.00 18.00 19.00 20.00 21.00 22.00 23.00 24.00 25.00 26.00 27.00 28.00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00 +M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js M1 cereals, winter n NA M1 cereals, winter s of M1 cereals, winter n mm M1 cereals, winter s js 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00 diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html index 899a0a4..16df913 100644 --- a/docs/reference/pfm_degradation.html +++ b/docs/reference/pfm_degradation.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/plot.TOXSWA_cwa.html b/docs/reference/plot.TOXSWA_cwa.html index cf5bdf9..65703e8 100644 --- a/docs/reference/plot.TOXSWA_cwa.html +++ b/docs/reference/plot.TOXSWA_cwa.html @@ -62,7 +62,7 @@ segment of a TOXSWA surface water body." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/plot.one_box.html b/docs/reference/plot.one_box.html index e4ffef4..473243a 100644 --- a/docs/reference/plot.one_box.html +++ b/docs/reference/plot.one_box.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/read.TOXSWA_cwa.html b/docs/reference/read.TOXSWA_cwa.html index d838794..5f6aba2 100644 --- a/docs/reference/read.TOXSWA_cwa.html +++ b/docs/reference/read.TOXSWA_cwa.html @@ -36,7 +36,8 @@ segment of a TOXSWA surface water body. Per default, the data for the last segment are imported. As TOXSWA 4 reports the values at the end of the hour (ConLiqWatLayCur) in its summary file, we use this value as well instead -of the hourly averages (ConLiqWatLay)." /> +of the hourly averages (ConLiqWatLay). In TOXSWA 5.5.3 this variable was +renamed to ConLiqWatLay in the out file." /> <meta name="twitter:card" content="summary" /> @@ -65,7 +66,7 @@ of the hourly averages (ConLiqWatLay)." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -112,7 +113,8 @@ of the hourly averages (ConLiqWatLay)." /> segment of a TOXSWA surface water body. Per default, the data for the last segment are imported. As TOXSWA 4 reports the values at the end of the hour (ConLiqWatLayCur) in its summary file, we use this value as well instead -of the hourly averages (ConLiqWatLay).</p> +of the hourly averages (ConLiqWatLay). In TOXSWA 5.5.3 this variable was +renamed to ConLiqWatLay in the out file.</p> </div> @@ -126,7 +128,7 @@ of the hourly averages (ConLiqWatLay).</p> <tr> <th>filename</th> <td><p>The filename of the cwa file (TOXSWA 2.x.y or similar) or the -out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).</p></td> +out file when using FOCUS TOXSWA 4 (i.e. TOXSWA 4.4.2) or higher.</p></td> </tr> <tr> <th>basedir</th> @@ -143,7 +145,7 @@ the segment number.</p></td> </tr> <tr> <th>substance</th> - <td><p>For TOXSWA 4 .out files, the default value "parent" leads + <td><p>For .out files, the default value "parent" leads to reading concentrations of the parent compound. Alternatively, the substance of interested can be selected by its code name.</p></td> </tr> diff --git a/docs/reference/sawtooth.html b/docs/reference/sawtooth.html index 6b2ce13..87dcab2 100644 --- a/docs/reference/sawtooth.html +++ b/docs/reference/sawtooth.html @@ -63,7 +63,7 @@ times, with an interval i." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/soil_scenario_data_EFSA_2015.html b/docs/reference/soil_scenario_data_EFSA_2015.html index 77759b5..23fe106 100644 --- a/docs/reference/soil_scenario_data_EFSA_2015.html +++ b/docs/reference/soil_scenario_data_EFSA_2015.html @@ -63,7 +63,7 @@ scenario and model adjustment factors from p. 15 and p. 17 are included." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> @@ -122,10 +122,10 @@ scenario and model adjustment factors from p. 15 and p. 17 are included.</p> <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> <p>EFSA (European Food Safety Authority) (2015) -EFSA guidance document for predicting environmental concentrations -of active substances of plant protection products and transformation products of these -active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 -doi:10.2903/j.efsa.2015.4093</p> + EFSA guidance document for predicting environmental concentrations + of active substances of plant protection products and transformation products of these + active substances in soil. <em>EFSA Journal</em> <b>13</b>(4) 4093 + doi:10.2903/j.efsa.2015.4093</p> <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> diff --git a/docs/reference/soil_scenario_data_EFSA_2017.html b/docs/reference/soil_scenario_data_EFSA_2017.html new file mode 100644 index 0000000..be49263 --- /dev/null +++ b/docs/reference/soil_scenario_data_EFSA_2017.html @@ -0,0 +1,177 @@ +<!-- Generated by pkgdown: do not edit by hand --> +<!DOCTYPE html> +<html> + <head> + <meta charset="utf-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge"> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> + +<title>Properties of the predefined scenarios from the EFSA guidance from 2017 — soil_scenario_data_EFSA_2017 • pfm</title> + +<!-- jquery --> +<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script> +<!-- Bootstrap --> + +<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous"> +<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script> + +<!-- Font Awesome icons --> +<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous"> + +<!-- clipboard.js --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script> + +<!-- sticky kit --> +<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script> + +<!-- pkgdown --> +<link href="../pkgdown.css" rel="stylesheet"> +<script src="../pkgdown.js"></script> + + + +<meta property="og:title" content="Properties of the predefined scenarios from the EFSA guidance from 2017 — soil_scenario_data_EFSA_2017" /> + +<meta property="og:description" content="Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the +scenario and model adjustment factors from p. 16 and p. 18 are included." /> +<meta name="twitter:card" content="summary" /> + + + +<!-- mathjax --> +<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script> + +<!--[if lt IE 9]> +<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> +<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> +<![endif]--> + + + </head> + + <body> + <div class="container template-reference-topic"> + <header> + <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <div class="container"> + <div class="navbar-header"> + <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + <span class="icon-bar"></span> + </button> + <span class="navbar-brand"> + <a class="navbar-link" href="../index.html">pfm</a> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> + </span> + </div> + + <div id="navbar" class="navbar-collapse collapse"> + <ul class="nav navbar-nav"> + <li> + <a href="../index.html"> + <span class="fa fa-home fa-lg"></span> + + </a> +</li> +<li> + <a href="../reference/index.html">Reference</a> +</li> + </ul> + + <ul class="nav navbar-nav navbar-right"> + <li> + <a href="https://github.com/jranke/pfm"> + <span class="fa fa-github fa-lg"></span> + + </a> +</li> + </ul> + + </div><!--/.nav-collapse --> + </div><!--/.container --> +</div><!--/.navbar --> + + + </header> + +<div class="row"> + <div class="col-md-9 contents"> + <div class="page-header"> + <h1>Properties of the predefined scenarios from the EFSA guidance from 2017</h1> + <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/soil_scenario_data_EFSA_2017.R'><code>R/soil_scenario_data_EFSA_2017.R</code></a></small> + <div class="hidden name"><code>soil_scenario_data_EFSA_2017.Rd</code></div> + </div> + + <div class="ref-description"> + + <p>Properties of the predefined scenarios used at Tier 1, Tier 2A and Tier 3A for the +concentration in soil as given in the EFSA guidance (2017, p. 14/15). Also, the +scenario and model adjustment factors from p. 16 and p. 18 are included.</p> + + </div> + + + <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + + <p>A data frame with one row for each scenario. Row names are the scenario codes, + e.g. CTN for the Northern scenario for the total concentration in soil. Columns are + mostly self-explanatory. <code>rho</code> is the dry bulk density of the top soil.</p> + + <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2> + + <p>EFSA (European Food Safety Authority) (2017) + EFSA guidance document for predicting environmental concentrations + of active substances of plant protection products and transformation products of these + active substances in soil. <em>EFSA Journal</em> <b>15</b>(10) 4982 + doi:10.2903/j.efsa.2017.4982</p> + + + <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> + <pre class="examples"><div class='input'><span class='no'>soil_scenario_data_EFSA_2017</span></div><div class='output co'>#> Zone Country T_arit T_arr Texture f_om theta_fc rho f_sce f_mod +#> CTN North Estonia 5.7 7.6 Coarse 0.220 0.244 0.707 1.4 3 +#> CTC Central Poland 7.4 9.3 Coarse 0.122 0.244 0.934 1.4 3 +#> CTS South France 10.2 11.7 Medium 0.070 0.349 1.117 1.4 3 +#> CLN North Denmark 8.0 9.2 Medium 0.025 0.349 1.371 1.6 4 +#> CLC Central Austria 9.3 11.3 Medium 0.018 0.349 1.432 1.6 4 +#> CLS South Spain 15.4 16.7 Medium 0.010 0.349 1.521 1.6 4 +#> FOCUS_zone prec +#> CTN Hamburg 639 +#> CTC Hamburg 617 +#> CTS Hamburg 667 +#> CLN Hamburg 602 +#> CLC Châteaudun 589 +#> CLS Sevilla 526</div></pre> + </div> + <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> + <h2>Contents</h2> + <ul class="nav nav-pills nav-stacked"> + + <li><a href="#format">Format</a></li> + + <li><a href="#source">Source</a></li> + + <li><a href="#examples">Examples</a></li> + </ul> + + </div> +</div> + + <footer> + <div class="copyright"> + <p>Developed by Johannes Ranke.</p> +</div> + +<div class="pkgdown"> + <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p> +</div> + + </footer> + </div> + + + + </body> +</html> + diff --git a/docs/reference/sum_periods.html b/docs/reference/sum_periods.html index 96cbaf2..109d9e7 100644 --- a/docs/reference/sum_periods.html +++ b/docs/reference/sum_periods.html @@ -61,7 +61,7 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> diff --git a/docs/reference/twa.html b/docs/reference/twa.html index 8f8e98f..f74399c 100644 --- a/docs/reference/twa.html +++ b/docs/reference/twa.html @@ -63,7 +63,7 @@ is after one window has passed." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.4.5</span> + <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.5.1</span> </span> </div> |