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2017-06-20Tests for Step 1 and 2 (input file only) pass, PELMO failsJohannes Ranke5-34/+131
There are spurious errors in the output PELMO generates. Two examples are in the test.log
2017-06-20Fix generation of input filesJohannes Ranke1-18/+21
- Write header only if not appending - Write max_soil and max_ws for metabolites - Formatting
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke9-122/+303
2017-06-17Start with the generation of an input fileJohannes Ranke3-6/+80
2017-05-24Fix for the sawtooth function for repeated applicationsJohannes Ranke7-9/+9
For n > 2, the second application was made at 2 * i instead of i.
2017-05-24Re-enable PELMO examples and testsJohannes Ranke17-49/+89
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Documentation fixJohannes Ranke3-6/+6
2017-05-17Simplify tests where possibleJohannes Ranke4-13/+36
2017-05-16Update static documentationJohannes Ranke2-27/+32
2017-05-16Remove external data also from git as their licence is unclearJohannes Ranke3-50/+2
2017-05-16Add build and test logs to the git repoJohannes Ranke3-1/+41
2017-05-16Add TWA concentrations for days > 1, fix linkJohannes Ranke6-28/+59
Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16Finish the Step 1 calculator including testsJohannes Ranke63-878/+2110
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-05-15Start of an Steps 1/2 calculator in RJohannes Ranke6-0/+256
2017-03-29Make it possible to use expressions in axis labelsJohannes Ranke1-2/+2
2017-03-28Update ChangelogJohannes Ranke1-0/+18
2017-03-06Move static docs to pkdown.jrwb.de, update themJohannes Ranke4-50/+8
2017-03-01The package is not in subdir `pkg` any moreJohannes Ranke1-1/+1
2017-01-31Small documentation fixJohannes Ranke4-4/+16
2017-01-30Regenerate static documentationJohannes Ranke1-1/+1
2017-01-30Correct psm file in the example with metabolitesJohannes Ranke10-7/+613
2017-01-30Ignore windows binary builds in git and in R packageJohannes Ranke2-0/+2
2017-01-30Test reproducing the FOCUS Summary informationJohannes Ranke5-28/+115
generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.
2017-01-30Merge branch 'master' of jrwb.de:pfmJohannes Ranke3-0/+89
2017-01-30Merge branch 'master' of ssh://jrwb.de/pfmJohannes Ranke5-14/+26
2017-01-30PELMO summary files for testingJohannes Ranke3-0/+89
2017-01-30Use relative tolerance of 1e-6 for flux testJohannes Ranke2-1/+15
to pass test also for more extreme situations as in the current test data.
2017-01-30Better documentation of PELMO_runs().Johannes Ranke5-14/+26
2017-01-30pfm for windows in my dratJohannes Ranke1-0/+11
2017-01-30Merge branch 'master' of jrwb.de:pfmJohannes Ranke1-0/+0
2017-01-30More extreme parameters for metabolites for testingJohannes Ranke1-0/+0
2017-01-29Setting up PELMO runs, execution and evaluationJohannes Ranke28-80/+1717
It all works!
2017-01-27Merge branch 'master' of jrwb.de:pfmJohannes Ranke1-0/+0
2017-01-27Really use all scenarios in test dataJohannes Ranke1-0/+0
Maize, that was used in the last commit, is not parameterised for Jokioinen
2017-01-27Use all scenarios in the test dataJohannes Ranke1-0/+0
2017-01-27Also test run with metabolitesJohannes Ranke3-34/+45
2017-01-27Merge branch 'master' of jrwb.de:pfmJohannes Ranke1-0/+0
2017-01-27Include a run with metabolites in PELMO test dataJohannes Ranke1-0/+0
2017-01-27Set up FOCUS PELMO runs and run them in parallelJohannes Ranke17-6/+778
- This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files
2017-01-26Improved test data with 'irrigation'Johannes Ranke1-0/+0
2017-01-25More variable selection of test dataJohannes Ranke1-0/+0
2017-01-25Use tar.bz2 to correctly transfer file namesJohannes Ranke2-0/+0
2017-01-25Add FOCUS PELMO 5.5.3 output for dummy pesticide DJohannes Ranke1-0/+0
2017-01-19Another correction of the docsJohannes Ranke3-15/+15
2017-01-19Corrections in the documentationJohannes Ranke4-23/+60
2017-01-19Correct default y axis label for plot.one_boxJohannes Ranke11-3/+3
2017-01-19Fix one_box for ini = 1, use in sawtooth examplesJohannes Ranke10-14/+26
2017-01-19Move mkin::twa to pfm::max_twa.mkinfitJohannes Ranke14-19/+182
- Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs
2017-01-19Make max_twa() a bit saferJohannes Ranke3-4/+30
2017-01-19Documentation updatesJohannes Ranke6-16/+14

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