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2017-10-23Typos, rebuild static docsJohannes Ranke10-10/+25
2017-10-10Add ORCIDJohannes Ranke1-1/+2
2017-10-09Write Step 2 input files on windowsJohannes Ranke5-10/+26
2017-10-06Update docs, small bugfixJohannes Ranke1-2/+2
2017-08-24Build for windows using roxygen from masterJohannes Ranke3-6/+32
Now that roxygen can handle UTF8 characters in function arguments thanks to Hadley Wickham and Jim Hester
2017-07-24Improve MakefileJohannes Ranke1-3/+3
2017-07-24Version bump as I had 0.4.3 in my drat alreadyJohannes Ranke1-1/+1
2017-07-24Avoid warning about possibly mis-spelled wordJohannes Ranke1-3/+3
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke9-22/+103
Also add the reference file for testing Step12 input file generation
2017-06-22Merge branch 'master' of kolab:pfmJohannes Ranke1-2/+11
2017-06-22Add scenario, region and season to run nameJohannes Ranke5-25/+70
2017-06-20Possibility to turn off formation in waterJohannes Ranke1-2/+11
This makes it possible to compare the Step 1 output with earlier versions of the Steps 12 tool.
2017-06-20Fix line endings and allow all interception classesJohannes Ranke1-2/+4
2017-06-20Keep dos format for pesticide.txt test dataJohannes Ranke1-0/+1
2017-06-20Now the errors in PELMO output are gone - not reproducibleJohannes Ranke1-24/+1
2017-06-20Tests for Step 1 and 2 (input file only) pass, PELMO failsJohannes Ranke5-34/+131
There are spurious errors in the output PELMO generates. Two examples are in the test.log
2017-06-20Fix generation of input filesJohannes Ranke1-18/+21
- Write header only if not appending - Write max_soil and max_ws for metabolites - Formatting
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke9-122/+303
2017-06-17Start with the generation of an input fileJohannes Ranke3-6/+80
2017-05-24Fix for the sawtooth function for repeated applicationsJohannes Ranke7-9/+9
For n > 2, the second application was made at 2 * i instead of i.
2017-05-24Re-enable PELMO examples and testsJohannes Ranke17-49/+89
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Documentation fixJohannes Ranke3-6/+6
2017-05-17Simplify tests where possibleJohannes Ranke4-13/+36
2017-05-16Update static documentationJohannes Ranke2-27/+32
2017-05-16Remove external data also from git as their licence is unclearJohannes Ranke3-50/+2
2017-05-16Add build and test logs to the git repoJohannes Ranke3-1/+41
2017-05-16Add TWA concentrations for days > 1, fix linkJohannes Ranke6-28/+59
Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16Finish the Step 1 calculator including testsJohannes Ranke63-878/+2110
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-05-15Start of an Steps 1/2 calculator in RJohannes Ranke6-0/+256
2017-03-29Make it possible to use expressions in axis labelsJohannes Ranke1-2/+2
2017-03-28Update ChangelogJohannes Ranke1-0/+18
2017-03-06Move static docs to pkdown.jrwb.de, update themJohannes Ranke4-50/+8
2017-03-01The package is not in subdir `pkg` any moreJohannes Ranke1-1/+1
2017-01-31Small documentation fixJohannes Ranke4-4/+16
2017-01-30Regenerate static documentationJohannes Ranke1-1/+1
2017-01-30Correct psm file in the example with metabolitesJohannes Ranke10-7/+613
2017-01-30Ignore windows binary builds in git and in R packageJohannes Ranke2-0/+2
2017-01-30Test reproducing the FOCUS Summary informationJohannes Ranke5-28/+115
generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.
2017-01-30Merge branch 'master' of jrwb.de:pfmJohannes Ranke3-0/+89
2017-01-30Merge branch 'master' of ssh://jrwb.de/pfmJohannes Ranke5-14/+26
2017-01-30PELMO summary files for testingJohannes Ranke3-0/+89
2017-01-30Use relative tolerance of 1e-6 for flux testJohannes Ranke2-1/+15
to pass test also for more extreme situations as in the current test data.
2017-01-30Better documentation of PELMO_runs().Johannes Ranke5-14/+26
2017-01-30pfm for windows in my dratJohannes Ranke1-0/+11
2017-01-30Merge branch 'master' of jrwb.de:pfmJohannes Ranke1-0/+0
2017-01-30More extreme parameters for metabolites for testingJohannes Ranke1-0/+0
2017-01-29Setting up PELMO runs, execution and evaluationJohannes Ranke28-80/+1717
It all works!
2017-01-27Merge branch 'master' of jrwb.de:pfmJohannes Ranke1-0/+0
2017-01-27Really use all scenarios in test dataJohannes Ranke1-0/+0
Maize, that was used in the last commit, is not parameterised for Jokioinen
2017-01-27Use all scenarios in the test dataJohannes Ranke1-0/+0

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