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2020-07-21Clean test.log after testingJohannes Ranke3-13/+26
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke22-213/+50
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-07-07Adapt pfm_degradation to current mkinJohannes Ranke2-26/+9
use_of_ff = "max" is now the default
2020-06-17TSCF estimation equations, update docsJohannes Ranke39-383/+1008
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-17Skip testing on R-develJohannes Ranke1-1/+0
it currently fails with ✖ | 6 1 | Read and analyse TOXSWA cwa files [6.4 s] ──────────────────────────────────────────────────────────────────────────────────────────────────── test_TOXSWA.R:68: failure: Getting events and moving window analysis works H_sw_R1_stream$windows has changed from known value recorded in 'H_sw_R1_stream_windows.rds'. Component "window": Modes: character, numeric Component "window": Attributes: < target is NULL, current is list > Component "window": target is character, current is factor
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke51-412/+723
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2020-02-19Check in last build logJohannes Ranke3-3/+15
2019-10-23Fix static docs for set_nd_nqJohannes Ranke7-53/+27
2019-10-23Updated ChangeLog and DESCRIPTIONJohannes Ranke2-1/+7
2019-10-15Residue processing for depth profiles over timeJohannes Ranke14-427/+627
2019-10-10Do not mess with zero values at time zeroJohannes Ranke3-21/+32
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke5-9/+23
2019-10-10Fix documentation for set_ndJohannes Ranke4-61/+26
2019-10-10Finish documentation of set_nd and test itJohannes Ranke10-18/+339
2019-10-09Function to set non-detects in residue seriesJohannes Ranke6-4/+187
2019-09-27Built windows binary for dratJohannes Ranke2-10/+7
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke77-2042/+758
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-09-18Add url: tag to _pkgdown.yml, typo, update docsJohannes Ranke46-592/+955
2019-07-01TypoJohannes Ranke1-1/+1
2019-06-12Update of static docsJohannes Ranke51-49/+49
2019-06-12Documentation fixJohannes Ranke2-3/+8
2019-05-14Version bump and doc updateJohannes Ranke39-38/+47
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke14-27/+91
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke5-5/+34
2019-04-26Formatting improvement for the online docsJohannes Ranke3-2/+4
2019-04-26Another take on completing the drift dataJohannes Ranke42-307/+352
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-04-25Add more drift data, especially 3 m field crop dataJohannes Ranke46-170/+363
To support Agroscope in doing lots of PEC calculations for Switzerland
2019-04-25Remove leftover docs from earlier versionJohannes Ranke36-11025/+0
Docs now live in docs/
2019-02-21Update docsJohannes Ranke1-1/+9
2019-02-21Use codecovJohannes Ranke5-4/+37
2019-02-19Add grImport to Suggests:Johannes Ranke2-0/+2
Because chent which in turn suggests grImport is loaded from github which obviously does not pull grImport
2019-02-19Update README.htmlJohannes Ranke1-0/+1
2019-02-19Add Remotes: field for travisJohannes Ranke1-0/+3
2019-02-19Test on TravisJohannes Ranke2-0/+7
2019-02-19Add another test for Exposit drainageJohannes Ranke3-2/+30
to test overriding the mobility group derived from Koc
2019-02-19Stop endless appending to pesticide.txt exampleJohannes Ranke4-53/+3
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke16-67/+518
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke3-8/+18
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke80-2277/+1113
2019-01-30Convenience function for metabolite PEC soilJohannes Ranke2-14/+103
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke3-1/+11
2018-09-22Add test and update docsJohannes Ranke54-75/+449
2018-09-21Support FOMC in PEC_soilJohannes Ranke6-19/+85
2018-07-11Improve PELMO testsJohannes Ranke5-23/+42
2018-07-10Merge branch 'master' of kolab:pfmJohannes Ranke68-205/+971
2018-07-10Update static docsJohannes Ranke44-57/+308
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke20-121/+407
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-10.out file from TOXSWA 5.5.3 for testingJohannes Ranke1-0/+0
2018-07-10Adapt path to package on windowsJohannes Ranke1-1/+1
2018-07-04Some documentation updatesJohannes Ranke14-28/+56
Document that TOXSWA 5.5.3 is supported in the help files

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