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2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke11-192/+5
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-07-07Adapt pfm_degradation to current mkinJohannes Ranke1-24/+7
use_of_ff = "max" is now the default
2020-06-17TSCF estimation equations, update docsJohannes Ranke1-0/+31
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke1-5/+6
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2019-10-23Fix static docs for set_nd_nqJohannes Ranke1-2/+2
2019-10-15Residue processing for depth profiles over timeJohannes Ranke2-118/+164
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-20/+25
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-5/+5
2019-10-10Fix documentation for set_ndJohannes Ranke1-3/+7
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-2/+4
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+107
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke4-4/+104
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-07-01TypoJohannes Ranke1-1/+1
2019-06-12Documentation fixJohannes Ranke1-3/+2
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke1-5/+11
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke1-2/+12
2019-04-26Formatting improvement for the online docsJohannes Ranke1-0/+1
2019-04-26Another take on completing the drift dataJohannes Ranke1-11/+53
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-02-19Stop endless appending to pesticide.txt exampleJohannes Ranke1-1/+1
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke1-15/+90
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke1-7/+11
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke2-571/+0
2019-01-30Convenience function for metabolite PEC soilJohannes Ranke1-14/+79
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke1-0/+4
2018-09-22Add test and update docsJohannes Ranke1-3/+3
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-10/+64
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke4-50/+192
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke2-7/+8
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-11Adapt to TOXSWA 5.5.3Johannes Ranke1-5/+13
2018-06-08Enable PEC porewater for the default scenarioJohannes Ranke1-1/+1
The default scenario uses soil parameters from the REACH guidance R.16, Table R.16-9.
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke2-2/+38
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-1/+4
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke2-6/+7
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-1/+1
Rebuild pkgdown documentation
2017-12-15Improve handling of ยต in y axis for plot.TOXSWA_cwaJohannes Ranke1-1/+7
2017-12-14Update copyright dateJohannes Ranke1-1/+1
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke1-36/+60
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-4/+5
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke1-0/+119
2017-10-23Typos, rebuild static docsJohannes Ranke1-1/+1
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-2/+3
2017-10-06Update docs, small bugfixJohannes Ranke1-2/+2
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-1/+2
Also add the reference file for testing Step12 input file generation
2017-06-22Merge branch 'master' of kolab:pfmJohannes Ranke1-2/+11
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-4/+11
2017-06-20Possibility to turn off formation in waterJohannes Ranke1-2/+11
This makes it possible to compare the Step 1 output with earlier versions of the Steps 12 tool.
2017-06-20Fix line endings and allow all interception classesJohannes Ranke1-2/+4
2017-06-20Fix generation of input filesJohannes Ranke1-18/+21
- Write header only if not appending - Write max_soil and max_ws for metabolites - Formatting
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke1-39/+122
2017-06-17Start with the generation of an input fileJohannes Ranke1-3/+56

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