| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2024-01-31 | Fix test to correctly generate pesticide.txt | Ranke Johannes | 1 | -10/+16 | |
| 2022-11-10 | set_nd_nq is now in mkin, fix Steps12 bug | Johannes Ranke | 1 | -86/+0 | |
| If a scenario with a slash "/" was selected in PEC_sw_focus(), the Step 2 file generated giving an error (path not found) in the Steps12 calculator, because the scenario name is part of the "compound" name in this implementation, in order to show it in the list that the calculator presents. | |||||
| 2020-07-23 | PEC_sw_drift: Rautmann formula (1 app, Ackerbau) | Johannes Ranke | 1 | -4/+19 | |
| This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper. | |||||
| 2020-07-07 | Remove copyright headers, update TOXSWA_cwa test | Johannes Ranke | 5 | -3/+3 | |
| - The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed | |||||
| 2020-04-16 | Make na.rm = FALSE the default for geomean() | Johannes Ranke | 1 | -2/+2 | |
| This makes more sense and is in line with mean() from base R. Adapt tests and update docs. | |||||
| 2019-10-15 | Residue processing for depth profiles over time | Johannes Ranke | 1 | -11/+53 | |
| 2019-10-10 | Fix set_nd for metabolites, handle zero at time zero | Johannes Ranke | 1 | -0/+2 | |
| 2019-10-10 | Finish documentation of set_nd and test it | Johannes Ranke | 1 | -0/+42 | |
| 2019-09-27 | Fix for UK drainage, some EFSA interception and washoff | Johannes Ranke | 1 | -2/+5 | |
| - PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs | |||||
| 2019-02-19 | Add another test for Exposit drainage | Johannes Ranke | 1 | -0/+8 | |
| to test overriding the mobility group derived from Koc | |||||
| 2019-02-19 | Add German drainage calculations using Exposit 3.02 | Johannes Ranke | 2 | -19/+75 | |
| 2019-01-31 | Separate out PELMO utilities into rPELMO | Johannes Ranke | 1 | -201/+0 | |
| 2018-09-22 | Add test and update docs | Johannes Ranke | 1 | -0/+20 | |
| 2018-07-11 | Improve PELMO tests | Johannes Ranke | 1 | -19/+15 | |
| 2018-07-10 | EFSA PEC soil guidance from 2017 | Johannes Ranke | 3 | -36/+91 | |
| - Implement the new guidance as well as possible - Maintenance work addressing CRAN checks | |||||
| 2017-10-27 | Exposit runoff calculations for surface water | Johannes Ranke | 1 | -0/+25 | |
| 2017-06-22 | Add scenario, region and season to run name | Johannes Ranke | 1 | -19/+23 | |
| 2017-06-20 | Tests for Step 1 and 2 (input file only) pass, PELMO fails | Johannes Ranke | 1 | -28/+88 | |
| There are spurious errors in the output PELMO generates. Two examples are in the test.log | |||||
| 2017-06-19 | Single line of generated Step12 input file partially validated | Johannes Ranke | 1 | -68/+104 | |
| 2017-06-17 | Start with the generation of an input file | Johannes Ranke | 1 | -2/+13 | |
| 2017-05-24 | Re-enable PELMO examples and tests | Johannes Ranke | 1 | -6/+20 | |
| - Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs | |||||
| 2017-05-17 | Simplify tests where possible | Johannes Ranke | 1 | -11/+6 | |
| 2017-05-16 | Add TWA concentrations for days > 1, fix link | Johannes Ranke | 1 | -14/+14 | |
| Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator. | |||||
| 2017-05-16 | Finish the Step 1 calculator including tests | Johannes Ranke | 2 | -16/+88 | |
| Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer | |||||
| 2017-05-15 | Start of an Steps 1/2 calculator in R | Johannes Ranke | 1 | -0/+52 | |
| 2017-01-30 | Test reproducing the FOCUS Summary information | Johannes Ranke | 1 | -1/+35 | |
| generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory. | |||||
| 2017-01-30 | Use relative tolerance of 1e-6 for flux test | Johannes Ranke | 1 | -1/+3 | |
| to pass test also for more extreme situations as in the current test data. | |||||
| 2017-01-29 | Setting up PELMO runs, execution and evaluation | Johannes Ranke | 1 | -18/+56 | |
| It all works! | |||||
| 2017-01-27 | Also test run with metabolites | Johannes Ranke | 1 | -30/+33 | |
| 2017-01-27 | Set up FOCUS PELMO runs and run them in parallel | Johannes Ranke | 2 | -0/+101 | |
| - This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files | |||||
| 2017-01-19 | Move mkin::twa to pfm::max_twa.mkinfit | Johannes Ranke | 1 | -0/+11 | |
| - Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs | |||||
| 2016-09-27 | Reorganise repository using standard package layout | Johannes Ranke | 13 | -0/+266 | |
 |
index : pfm | |
| Utilities for pesticide fate modelling (also on github) | Johannes Ranke |
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