diff options
Diffstat (limited to 'backport_others')
-rw-r--r-- | backport_others | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/backport_others b/backport_others new file mode 100644 index 0000000..697ede1 --- /dev/null +++ b/backport_others @@ -0,0 +1,50 @@ +#!/bin/bash + +# Author: Johannes Ranke <jranke@uni-bremen.de> + +# Script to automate backporting for CRAN +# Make sure the R version in ./backport is correctly set and the pbuilder chroot is updated + +usage() +{ +echo "Usage: ./backport_others [options] squeeze|wheezy|jessie" +echo "Options:" +echo " -n Skip apt-get update/upgrade and pbuilder update" +} + +update=true +while getopts ":n" flag; do + case $flag in + n) + update=false + ;; + \?) + echo "Invalid option: -$OPTARG" >&2 + ;; + esac + shift $((OPTIND-1)) +done + +# Check for number of arguments +if [ $# -lt 1 ]; then usage; exit 1; fi +DIST=$1 + +# Update pbuilder chroot +if [ "$update" = true ] +then + sudo -E pbuilder update +fi + +# Validate distribution argument +if [ $DIST != "squeeze" ] && [ $DIST != "wheezy" ] && [ $DIST != "jessie" ]; then usage; exit 1; fi +export DIST + +# When doing a new repository, lattice, r-cran-mass and survival have to be +# built first, then nlme and rmatrix, then the rest + +# Packages to backport to squeeze/wheezy/jessie (without rpy2): +for i in lattice nlme rmatrix mgcv boot cluster codetools foreign kernsmooth r-cran-class r-cran-coda r-cran-spatial r-cran-nnet r-cran-mass rodbc rpart survival r-cran-littler rpy rkward r-cran-rjags; do + + ./backport -n $i $DIST + +done |