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2022-10-31Fix R CMD checkJohannes Ranke2-11/+11
2022-10-29Another attempt to make the test robustJohannes Ranke2-19/+19
As the last update failed on travis. Now we should be more robust, as rounding to one digit works better when parameters are log-transformed (mkin transformations) in the output.
2022-10-28Rename parhist to parplot and make it genericJohannes Ranke1-21/+21
That parhist name was not the brightest idea, as it does not show histograms.
2022-10-28Export status method for mhmkin, move to status.RJohannes Ranke1-20/+20
2022-10-28Update test to renamed methodJohannes Ranke1-13/+13
2022-10-26Really test anova output, test covariatesJohannes Ranke1-11/+11
2022-10-26Reduced sfo model for multistart.saem.mkin testsJohannes Ranke1-13/+13
2022-10-26Remove kernel density estimate from llhistJohannes Ranke1-15/+15
2022-10-26Try to make multistart (more) reproducibleJohannes Ranke1-9/+9
2022-10-26Tests pass locallyJohannes Ranke1-21/+19
2022-10-26Make multistart work with testthat scopesJohannes Ranke1-12/+20
Also skip long-running test with saem using the analytical from mkin
2022-10-25Change DFOP mixed model data in tests, updatesJohannes Ranke1-12/+12
2022-10-25Complete documentation and fix a bugJohannes Ranke2-13/+19
The bug was introduced by the changes in summary.saem.mmkin.R and surfaced in the tests when using saemix transformations.
2022-10-17SFORB in saem, update for mhmkin and multistartJohannes Ranke1-8/+8
2022-10-14Select best fit from multistart, use in parhistJohannes Ranke1-13/+13
- Add 'best' and 'which.best' generics with methods for multistart objects - Per default, scale the parameters in parhist plots using the fit with the highest log likelihood.
2022-10-05Simplify the removal of random effectsJohannes Ranke1-10/+10
This is achieved by introducing the argument 'no_random_effect' to the saem function.
2022-09-30Test the package with saemix development versionJohannes Ranke1-43/+12
2022-09-29Add set_nd_nq previously in pfmJohannes Ranke1-14/+46
pfm depends on mkin anyways, so reexporting set_nd_nq and set_nd_nq_focus in pfm should provide reasonable continuity.
2022-09-28Fix handling of multistart fits with failuresJohannes Ranke1-14/+2
2022-09-16Improve multistart documentation, bugfixJohannes Ranke1-2/+14
- Split out llhist and parhist documentation - Add example code for multistart - Create a multistart vignette, because the example code fails when run by pkgdown - Fix multistart for the case of mkin transformations in the saem fit
2022-09-16Rerun test with saemix 3.1 from CRANJohannes Ranke1-10/+10
Apparently, the change I introduced into saemix saemixdevelopment/saemixextension#34 to fix error model parameters to positive values slightly influences the results. So this is now with the CRAN version to keep test results in sync with Travis
2022-09-16Diagnostic plots for multistart methodJohannes Ranke1-14/+14
2022-08-10Batch processing for hierarchical fitsJohannes Ranke1-10/+11
- 'R/mhmkin.R': New method for performing multiple hierarchical mkin fits in one function call, optionally in parallel. - 'R/saem.R': 'logLik' and 'update' methods for 'saem.mmkin' objects. - 'R/illparms.R': Add methods for 'saem.mmkin' and 'mhmkin' objects. tests: Use 2 cores on travis, should work according to docs
2022-08-08Error on unsupported saemix transformationsJohannes Ranke1-9/+9
Also, support FOMC with saemix transformations
2022-08-08Fix fitting HS with saemix transformationsJohannes Ranke1-12/+10
2022-07-22Move logs into own directory to clean rootJohannes Ranke6-0/+276

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