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2023-03-23Support covariates in endpoints()Johannes Ranke1-3/+19
2022-11-01Fix plotting saem fits with covariatesJohannes Ranke1-0/+5
2022-04-09Improvements to mean_degparms() and plot.mixed.mmkin()Johannes Ranke1-0/+4
- New argument 'default_log_parms' for mean_degparms() - 'plot.mixed.mmkin': Pass the frame argument also to residual plots, take the 'default_log_parms' argument for 'mean_degparms' used for constructing approximate population curves, plot population curve last to avoid that it is covered by data
2021-06-09Rudimentary support for setting up nlmixr modelsJohannes Ranke1-0/+5
- All degradation models are specified as ODE models. This appears to be fast enough - Error models are being translated to nlmixr as close to the mkin error model as possible. When using the 'saem' backend, it appears not to be possible to use the same error model for more than one observed variable - No support yet for models with parallel formation of metabolites, where the ilr transformation is used in mkin per default - There is a bug in nlmixr which appears to be triggered if the data are not balanced, see nlmixrdevelopment/nlmixr#530 - There is a print and a plot method, the summary method is not finished
2021-03-19test_log_parms for plot.mixed.mmkin, roxygen runJohannes Ranke1-0/+8
2021-02-06Reintroduce interface to saemixJohannes Ranke1-1/+10
Also after the upgrade from buster to bullseye of my local system, some test results for saemix have changed.
2021-02-03Prepare for v1.0.0v1.0.0Johannes Ranke1-11/+2
- Improve authorship and copyright information - Prepare pkgdown config - Remove dependence on saemix as we need the development version which is not ready for CRAN - Temporarily remove saemix interface to check code coverage of the rest
2020-12-21plot.mixed: Possibility to overlay predictionsJohannes Ranke1-1/+12
2020-12-08mixed.mmkin and test coverageJohannes Ranke1-1/+1
2020-11-09saemix.mmkin and nlme.mmkin inherit from mixed.mmkinJohannes Ranke1-0/+99
With a plot method. The class mixed.mmkin is currently only a virtual class created to unify the plotting method.

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